View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7972_low_4 (Length: 576)
Name: NF7972_low_4
Description: NF7972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7972_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 534; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 19 - 560
Target Start/End: Complemental strand, 37834972 - 37834431
Alignment:
| Q |
19 |
gcaatgccctgtttctcagaagattaaaactcaactcgtaggttctaactgttctctaccactcaaaggtaaatttcttctattttattttgatgtactg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37834972 |
gcaatgccctgtttctcagaagattaaaactcaactcgtaggttctaactgttctctaccactcaaaggtaaatttcttctattttattttaatgtactg |
37834873 |
T |
|
| Q |
119 |
tcgatgtaaaataaattggttacaggtttcccttctatcactcaatcatgcatttccatgtcactaaaagaggatgacttttttagatgattgttgtaag |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37834872 |
tcgatgtaaaataaattggttacaggtttcccttctatcactcaatcatgcatttccatgtcactaaaagaggatgacttttttagatgattgttgtaag |
37834773 |
T |
|
| Q |
219 |
aatcaaactttgtgacatagcaatgcatgattggatgatactgtaacgaaattatgcgctaataatgcagcaaagttaaaacgtcattttatatttaatt |
318 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37834772 |
aatcaaacttagtgacatagcaatgcatgattggatgatactgtaacgaaattatgcgctaataatgcagcaaagttaaaacgtcattttatatttaatt |
37834673 |
T |
|
| Q |
319 |
caggcaagatcttacctaacatgtcatactaattgtaaaattggaattgtgatagatgatcaagaaaggttgcctgtctttcgtcaggtagattatatcc |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37834672 |
caggcaagatcttacctaacatgtcatactaattgtaaaattggaattgtgatagatgatcaagaaaggttgcctgtctttcgtcaggtagattatatcc |
37834573 |
T |
|
| Q |
419 |
cactcagtcaagctaatgaaaccagacacattaataatgttggatcggcatgtgaaccgtcaaaactccttggctattattcatcatggcaacatatctt |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37834572 |
cactcagtcaagctaatgaaaccagacacattaataatgttggatcggcatgtgaaccgtcaaaactccttggctattattcatcatggcaacatatctt |
37834473 |
T |
|
| Q |
519 |
ggacaatactgctgcaagttatgacgagctttttcagccttc |
560 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37834472 |
ggacaatactgctgcaagttatgacgagctttttcagccttc |
37834431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 320 - 518
Target Start/End: Complemental strand, 37843531 - 37843336
Alignment:
| Q |
320 |
aggcaagatcttacctaacatgtcatactaattgtaaaattggaattgtgatagatgatcaagaaaggttgcctgtctttcgtcaggtagattatatccc |
419 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||| |||||| |||||||||||||||||| ||||||||||||||| ||| |||||| ||| ||||| | |
|
|
| T |
37843531 |
aggcaagatcttaccatacatgccatactaattgtgaaattgaaattgtgatagatgatcaggaaaggttgcctgtcattcctcaggttgatgatatctc |
37843432 |
T |
|
| Q |
420 |
actcagtcaagctaatgaaaccagacacattaataatgttggatcggcatgtgaaccgtcaaaactccttggctattattcatcatggcaacatatctt |
518 |
Q |
| |
|
|||||||||| |||||||||||| | ||||||| |||||||||| | ||||||||| |||||| | |||||| | ||||||||||||| ||||||| |
|
|
| T |
37843431 |
actcagtcaaactaatgaaaccaaatacattaacaatgttggattgacatgtgaactctcaaaagttcttggc---ttttcatcatggcaagatatctt |
37843336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 200
Target Start/End: Complemental strand, 37843776 - 37843678
Alignment:
| Q |
102 |
tttattttgatgtactgtcgatgtaaaataaattggttacaggtttcccttctatcactcaatcatgcatttccatgtcactaaaagaggatgactttt |
200 |
Q |
| |
|
|||||||||||| || ||| |||||||||||| | |||| |||||||||||| || ||||||||| |||||| | ||| |||||| || |||||||| |
|
|
| T |
37843776 |
tttattttgatgcacggtcagcgtaaaataaattcgatacatgtttcccttctaccaatcaatcatgtatttccgtctcattaaaagcgggtgactttt |
37843678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 61 - 103
Target Start/End: Complemental strand, 37843835 - 37843793
Alignment:
| Q |
61 |
ttctaactgttctctaccactcaaaggtaaatttcttctattt |
103 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||| |||| |
|
|
| T |
37843835 |
ttctaactgtcctctacctctcaaaggtaaatttcttcaattt |
37843793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University