View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7972_low_7 (Length: 509)
Name: NF7972_low_7
Description: NF7972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7972_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 20 - 493
Target Start/End: Original strand, 14545615 - 14546082
Alignment:
| Q |
20 |
gaagaaaggtaaaccctaatacatccacatcacacagatacacacacataccctctttctatgcgtgtgcagnnnnnnnnnnnnnggtcaaattttgtgt |
119 |
Q |
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| T |
14545615 |
gaagaaaggtaaaccctaatacatccacatcacacagatatacacacataccctctttctatgcgtgtgcagtttttttgtttttggtcaaattttgtgt |
14545714 |
T |
|
| Q |
120 |
gcagttataacgtgagttttatggaatgcttttcagatttcactgttaaaccgtaatgtaatctgtgatagtttgatattgttataagaaaagtttgtgg |
219 |
Q |
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| T |
14545715 |
tcagttataacgtgagttttatggaatgcttttcagatttcactgttaaaccgtaatgtaatctgtgatagtttgattttgttataagaaaagtttgtgg |
14545814 |
T |
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| Q |
220 |
tgtttggtcattcaatttcaaacctttcttcttttacagttacacgggtctttaattacactagcctctttactctagagatttttgtcttgtttgtact |
319 |
Q |
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| T |
14545815 |
tgtttggtcattca------aacctttcttcatttacagttacacgggtctttaattacactagcctctttactctagagatttttgtcttgtttgtact |
14545908 |
T |
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| Q |
320 |
tttgagttttgagtagttagcatcactactcagacttcatttcttcatagttttcaatannnnnnnngttttattactagcttatctgcttcatcctcgt |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
14545909 |
tttgagttttgagtagttagcatcactactcagacttcatttcttcatagttttcaatattttttttgttttattactagcttatctgcttcatcctcgt |
14546008 |
T |
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| Q |
420 |
gaataatgttcagtttttatgaacaacaaggactttctaacttgacattgcaaacagtggcctagattcaatac |
493 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14546009 |
gaataatgttcagtttttatgaacaacaaggactttctaacttgacattgcaaacagtggcctagattcaatac |
14546082 |
T |
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