View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7972_low_8 (Length: 494)
Name: NF7972_low_8
Description: NF7972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7972_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 14 - 404
Target Start/End: Complemental strand, 430206 - 429816
Alignment:
| Q |
14 |
cagagacaaaacaagagacatcaacgccgtttagtctacatcaccatcctcttaaatataaagttggtcataatatcagttaataatataaagttggtac |
113 |
Q |
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| T |
430206 |
cagagacaaaacaagagacatcaacgccgtttagtctacatcaccatcctcttaaatataaagttggttataatatcagttaataatataaagttggtac |
430107 |
T |
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| Q |
114 |
attttggttcacaaggaattagtccagttagaaaatgtaaagttagtgttttataaaggtagtttttgttcagttgggaaacactaaactgtttcactga |
213 |
Q |
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| T |
430106 |
attttggttcacaaggaattagtccagttagaaaatgtaaagttagtgttttataaaggtagtttttgttcagttgggaaacactaaactgtttcaccga |
430007 |
T |
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| Q |
214 |
gacattgtaccagtttggggctaactattaaaactttggttaagttttaccgaactgttgcaactgagtgtcagtgtcttatcaggtatatgtgattcat |
313 |
Q |
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| T |
430006 |
gacattgtaccagtttggggctaactattaaaactttggttaagttttaccgaactgttgcaactgagtgtcagtgtcttatcaggtatatgtgattcat |
429907 |
T |
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| Q |
314 |
aaacaatcatgctatacttcatttccttcatggaattaatatgttgacgacattaaggtttatcaagagaatgctataaaagataataaga |
404 |
Q |
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| T |
429906 |
aaacaatcatgctatacttcatttccttcatagaattaatatgttgacgacattaaggtttatcaagagaatgctataaaagataataaga |
429816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 435 - 475
Target Start/End: Complemental strand, 429819 - 429779
Alignment:
| Q |
435 |
aagacgagcatggttatcaacgatgcggcgacactgctaca |
475 |
Q |
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| T |
429819 |
aagacgagcatggttatcaacgatgcggtgacacttctaca |
429779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 445
Target Start/End: Original strand, 438899 - 438940
Alignment:
| Q |
404 |
agcagaaatggaggattgtcatgataaaatgaagacgagcat |
445 |
Q |
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| T |
438899 |
agcagaaatggaggattatcgcgataaaatgaagacgagcat |
438940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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