View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7973_high_4 (Length: 237)

Name: NF7973_high_4
Description: NF7973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7973_high_4
NF7973_high_4
[»] chr7 (3 HSPs)
chr7 (162-219)||(22015420-22015477)
chr7 (162-219)||(22711134-22711191)
chr7 (162-219)||(24800439-24800496)
[»] chr6 (3 HSPs)
chr6 (162-219)||(12477626-12477683)
chr6 (162-216)||(9816443-9816497)
chr6 (162-219)||(1707127-1707184)
[»] chr5 (3 HSPs)
chr5 (162-219)||(25218792-25218849)
chr5 (162-219)||(25282947-25283004)
chr5 (162-219)||(15283748-15283804)
[»] scaffold0554 (1 HSPs)
scaffold0554 (162-219)||(10830-10887)
[»] scaffold0054 (1 HSPs)
scaffold0054 (162-219)||(16020-16077)
[»] chr8 (1 HSPs)
chr8 (162-219)||(6831212-6831269)
[»] chr4 (1 HSPs)
chr4 (162-219)||(41416166-41416223)
[»] chr3 (3 HSPs)
chr3 (162-219)||(27967832-27967889)
chr3 (162-219)||(28672586-28672642)
chr3 (162-219)||(18159385-18159441)
[»] chr1 (1 HSPs)
chr1 (19-133)||(2701837-2701951)
[»] chr2 (3 HSPs)
chr2 (162-219)||(24225246-24225302)
chr2 (19-70)||(24760558-24760609)
chr2 (162-218)||(11703711-11703767)


Alignment Details
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 162 - 219
Target Start/End: Complemental strand, 22015477 - 22015420
Alignment:
Q  162 cactacaagaaaagtgccctgtccctacggccattttctaaagcggggtagtttttac 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22015477 cactacaagaaaagtgccctgtccctacggccattttctaaagcggggtagtttttac 22015420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 162 - 219
Target Start/End: Complemental strand, 22711191 - 22711134
Alignment:
Q  162 cactacaagaaaagtgccctgtccctacggccattttctaaagcggggtagtttttac 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22711191 cactacaagaaaagtgccctgtccctacggccattttctaaagcggggtagtttttac 22711134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 162 - 219
Target Start/End: Original strand, 24800439 - 24800496
Alignment:
Q  162 cactacaagaaaagtgccctgtccctacggccattttctaaagcggggtagtttttac 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24800439 cactacaagaaaagtgccctgtccctacggccattttctaaagcggggtagtttttac 24800496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 162 - 219
Target Start/End: Complemental strand, 12477683 - 12477626
Alignment:
Q  162 cactacaagaaaagtgccctgtccctacggccattttctaaagcggggtagtttttac 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12477683 cactacaagaaaagtgccctgtccctacggccattttctaaagcggggtagtttttac 12477626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 162 - 216
Target Start/End: Original strand, 9816443 - 9816497
Alignment:
Q  162 cactacaagaaaagtgccctgtccctacggccattttctaaagcggggtagtttt 216  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9816443 cactacaagaaaagtgccctgtccctacggccattttccaaagcggggtagtttt 9816497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 162 - 219
Target Start/End: Original strand, 1707127 - 1707184
Alignment:
Q  162 cactacaagaaaagtgccctgtccctacggccattttctaaagcggggtagtttttac 219  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  1707127 cactacaagaaaagggccctgtccctacagccattttctaaagcggggtagtttttac 1707184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 162 - 219
Target Start/End: Original strand, 25218792 - 25218849
Alignment:
Q  162 cactacaagaaaagtgccctgtccctacggccattttctaaagcggggtagtttttac 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25218792 cactacaagaaaagtgccctgtccctacggccattttctaaagcggggtagtttttac 25218849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 162 - 219
Target Start/End: Original strand, 25282947 - 25283004
Alignment:
Q  162 cactacaagaaaagtgccctgtccctacggccattttctaaagcggggtagtttttac 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25282947 cactacaagaaaagtgccctgtccctacggccattttctaaagcggggtagtttttac 25283004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 219
Target Start/End: Complemental strand, 15283804 - 15283748
Alignment:
Q  162 cactacaagaaaagtgccctgtccctacggccattttctaaagcggggtagtttttac 219  Q
    ||||||||||||||| |||||||||||| |||||||| |||||| |||||||||||||    
T  15283804 cactacaagaaaagtaccctgtccctacagccattttttaaagc-gggtagtttttac 15283748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 162 - 219
Target Start/End: Original strand, 10830 - 10887
Alignment:
Q  162 cactacaagaaaagtgccctgtccctacggccattttctaaagcggggtagtttttac 219  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10830 cactacaagaaaagtgccctgtccctacggccattttctaaagcagggtagtttttac 10887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 162 - 219
Target Start/End: Complemental strand, 16077 - 16020
Alignment:
Q  162 cactacaagaaaagtgccctgtccctacggccattttctaaagcggggtagtttttac 219  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16077 cactgcaagaaaagtgccctgtccctacggccattttctaaagcggggtagtttttac 16020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 162 - 219
Target Start/End: Complemental strand, 6831269 - 6831212
Alignment:
Q  162 cactacaagaaaagtgccctgtccctacggccattttctaaagcggggtagtttttac 219  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6831269 cactacaagaaaagtgccctgtccctacggccattttttaaagcggggtagtttttac 6831212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 162 - 219
Target Start/End: Original strand, 41416166 - 41416223
Alignment:
Q  162 cactacaagaaaagtgccctgtccctacggccattttctaaagcggggtagtttttac 219  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  41416166 cactacaagaaaagtgccctgtccctacggccattttctaaagtggggtagtttttac 41416223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 162 - 219
Target Start/End: Complemental strand, 27967889 - 27967832
Alignment:
Q  162 cactacaagaaaagtgccctgtccctacggccattttctaaagcggggtagtttttac 219  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27967889 cactacaagaaaagtgccctatccctacggccattttctaaagcggggtagtttttac 27967832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 162 - 219
Target Start/End: Complemental strand, 28672642 - 28672586
Alignment:
Q  162 cactacaagaaaagtgccctgtccctacggccattttctaaagcggggtagtttttac 219  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  28672642 cactacaagaaaa-tgccctgtccctacggccattttccaaagcggggtagtttttac 28672586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 219
Target Start/End: Complemental strand, 18159441 - 18159385
Alignment:
Q  162 cactacaagaaaagtgccctgtccctacggccattttctaaagcggggtagtttttac 219  Q
    ||||||||||||||| |||||||||||| |||||||| |||||| |||||||||||||    
T  18159441 cactacaagaaaagtaccctgtccctacagccattttttaaagc-gggtagtttttac 18159385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 2701837 - 2701951
Alignment:
Q  19 aatacttaagaggacctaagtctttgatttcaaaatatgttgctaagtttttctctaatctctcatttgctgcctcgttattacctataagaacaatata 118  Q
    ||||||| || ||||| ||||||||||||||||||  || |||||||||| | | |||||||||  || ||  ||| | ||||||| |||||| |||||     
T  2701837 aatacttgaggggacccaagtctttgatttcaaaaactgctgctaagtttctttttaatctctctatttctatctcatcattacctgtaagaataatatc 2701936  T
Q  119 atcaacatagactat 133  Q
    |||||||||||||||    
T  2701937 atcaacatagactat 2701951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 219
Target Start/End: Complemental strand, 24225302 - 24225246
Alignment:
Q  162 cactacaagaaaagtgccctgtccctacggccattttctaaagcggggtagtttttac 219  Q
    ||||||||||||||| |||||||||||| |||||||| |||||| |||||||||||||    
T  24225302 cactacaagaaaagtaccctgtccctacagccattttttaaagc-gggtagtttttac 24225246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 24760558 - 24760609
Alignment:
Q  19 aatacttaagaggacctaagtctttgatttcaaaatatgttgctaagttttt 70  Q
    ||||||| || ||||| || ||||| ||||||||||||||||||||||||||    
T  24760558 aatacttgaggggacccaattctttaatttcaaaatatgttgctaagttttt 24760609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 11703767 - 11703711
Alignment:
Q  162 cactacaagaaaagtgccctgtccctacggccattttctaaagcggggtagttttta 218  Q
    |||||||||||||||| ||||||||||  ||||||||| ||||| || ||| |||||    
T  11703767 cactacaagaaaagtggcctgtccctaatgccattttccaaagcaggatagctttta 11703711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University