View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7973_low_1 (Length: 714)
Name: NF7973_low_1
Description: NF7973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7973_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 470; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 20 - 591
Target Start/End: Original strand, 55130537 - 55131112
Alignment:
| Q |
20 |
tctagaactggtttccagtgatgctcatggtctttagctttcattaacctaaatagaacttcttctgcagaagctaattcctttttcttcttcatctcct |
119 |
Q |
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| T |
55130537 |
tctagaactggtttccagtgatgctcatggtctttggctttcattagcctaaatagaacttcttctgcagaagctaattcctttttcttcttcatctgct |
55130636 |
T |
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| Q |
120 |
gctttggctgttgattactactattaatattattctgttgtatcgctcccaataattcagcgagttcgctctttgaaatcttcaacgtcaccttcccact |
219 |
Q |
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| T |
55130637 |
gctttggctgttgattactactattaatattattctgttgtatcgctcccaataattcagcgagttcgctctttgaaatcttcaacgtcaccttcccact |
55130736 |
T |
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| Q |
220 |
tgcatcacaagaagctctaagctttcctaatacatcattctccttctggtgatgatcaagactagcttcatcaaacaccttgcttgatgatggatatggc |
319 |
Q |
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| T |
55130737 |
tgcatcacaagaagctctaagctttcctaatacatcattctccttctggtgatgatcaagactagcttcatcaaacaccttgcttgatgatggatatggc |
55130836 |
T |
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| Q |
320 |
tttgtcttccttgattcaggtttagacctcaaagattcccagtcctccccaacccactccattgaagatgatggtttgcaacagtttcccattttcttga |
419 |
Q |
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| T |
55130837 |
tttgtcttccttgattcaggtttagacctcaaagattcccagtcctccccaacccactccattgaagatgatggtttgcaacagtttcccattttcttga |
55130936 |
T |
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| Q |
420 |
ttacacacaacaataattaagcagtagattatttttctatgatgtctcttagaact---ta-gaagaatgatnnnnnnntttgttaaagttgtgaggatg |
515 |
Q |
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| T |
55130937 |
ttacacacaacaataattaagcagtagattatttttctatgatgtctcttagaactggatatgaagaatgataaaaaaatttgttaaagttgtgaggatg |
55131036 |
T |
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| Q |
516 |
tttaatttgnnnnnnnnnnnnnnnnngggggtgatgtgagagaaatggatatgaagggaaaatttgacatgagttt |
591 |
Q |
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| T |
55131037 |
tttaatttgatatatatgtatatatagggggtgatgtgagagaaatggatatgaagggaaaatttgacatgagttt |
55131112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 164 - 311
Target Start/End: Original strand, 55125868 - 55126015
Alignment:
| Q |
164 |
gctcccaataattcagcgagttcgctctttgaaatcttcaacgtcaccttcccacttgcatcacaagaagctctaagctttcctaatacatcattctcct |
263 |
Q |
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| T |
55125868 |
gctcccaataattcagccagctctgactttgaaatctttaatgttaccttcccacttgcatctccagaagctctaagcctttctaatagatcattctctt |
55125967 |
T |
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| Q |
264 |
tctggtgatgatcaagactagcttcatcaaacaccttgcttgatgatg |
311 |
Q |
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| T |
55125968 |
tctgaggatgatcaagatgagcttcatcaaacaccttacttgatgatg |
55126015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 645 - 699
Target Start/End: Original strand, 55131170 - 55131224
Alignment:
| Q |
645 |
cctcgctctcttgtgacggcaaatagattgggtctcatctcatatcatctgatgt |
699 |
Q |
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| T |
55131170 |
cctcgctctcttgtgacggcaaatagattgggtctcatctcatatcatctgatgt |
55131224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 344 - 425
Target Start/End: Original strand, 55126039 - 55126120
Alignment:
| Q |
344 |
gacctcaaagattcccagtcctccccaacccactccattgaagatgatggtttgcaacagtttcccattttcttgattacac |
425 |
Q |
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| T |
55126039 |
gacttcaaagatccccagtcttctccaccaaactccattgaaggtgctgccctgcaacagtttcccattttcttgattacac |
55126120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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