View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7973_low_2 (Length: 420)
Name: NF7973_low_2
Description: NF7973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7973_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 6 - 414
Target Start/End: Complemental strand, 38504189 - 38503781
Alignment:
| Q |
6 |
gactgaatatcattactcttattttattaacttatttattaatccgctcgaatgaagtttaggaattttaaatgaagttgatgttgaatgtggctaaggg |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38504189 |
gactgaatatcattactcttattttattaacttatttattaatccgctcgaatgaagtttaggaattttaaatgaagttgatgttgaatgtggctaaggg |
38504090 |
T |
|
| Q |
106 |
attgattgtgtattgtaggaagcctttgctgttgtaagagaagcttccaagagagttcttggtcttcgtccatttgatgttcagctgataggttagtgtt |
205 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38504089 |
atcgattgtgtattgtaggaagcctttgctgttgtaagagaagcttccaagagagttcttggtcttcgtccatttgatgttcagctgataggttagtgtt |
38503990 |
T |
|
| Q |
206 |
ttacgccgtgtttgatttgggctctttttggataaacaactaatttgctgctaacaacacaagcgtttattattagggatgtaaaagctagttacatgtt |
305 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
38503989 |
ttacgccgtgtttgatttgggctctgtttggataaacaactaatttgctgctaacaacacaagcatttattattagggatgtaaaagctagttacatgtt |
38503890 |
T |
|
| Q |
306 |
agtttaattagttaggagtaagtcagtttaattggctatatataagccttaatgtacgcactgcttgatgtaacaattctttcataataaatattatttt |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
38503889 |
agtttaattagttaggagtaagtcagtttaattggctatatataagccttaatgtacgcactgcttgatgtaacaattctctcatgataaatattatttt |
38503790 |
T |
|
| Q |
406 |
catctcact |
414 |
Q |
| |
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||| ||||| |
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| T |
38503789 |
catttcact |
38503781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 414
Target Start/End: Original strand, 6163324 - 6163362
Alignment:
| Q |
376 |
taacaattctttcataataaatattattttcatctcact |
414 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||| |
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| T |
6163324 |
taacaattctttcttaataaatattattttcatttcact |
6163362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 406
Target Start/End: Original strand, 8288562 - 8288655
Alignment:
| Q |
312 |
attagttaggagtaagtcagtttaattggctatatataagccttaatgtacgcactgc-ttgatgtaacaattctttcataataaatattattttc |
406 |
Q |
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||||||||||||| ||| || |||||||||||||| ||||||||||||| || | |||||||||||||||||||||| | |||||||||||| |
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| T |
8288562 |
attagttaggagttagttggtctaattggctatata--agccttaatgtactcatttaattgatgtaacaattctttcatactcaatattattttc |
8288655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 414
Target Start/End: Original strand, 14359366 - 14359404
Alignment:
| Q |
376 |
taacaattctttcataataaatattattttcatctcact |
414 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||| |
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|
| T |
14359366 |
taacaattctttcttaataaatattattttcatttcact |
14359404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 414
Target Start/End: Complemental strand, 28158960 - 28158922
Alignment:
| Q |
376 |
taacaattctttcataataaatattattttcatctcact |
414 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||| |
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|
| T |
28158960 |
taacaattctttcttaataaatattattttcatttcact |
28158922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 414
Target Start/End: Original strand, 4839902 - 4839940
Alignment:
| Q |
376 |
taacaattctttcataataaatattattttcatctcact |
414 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||| |
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| T |
4839902 |
taacaattctttcttaataaatattattttcatttcact |
4839940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 347
Target Start/End: Original strand, 25240159 - 25240220
Alignment:
| Q |
286 |
gtaaaagctagttacatgttagtttaattagttaggagtaagtcagtttaattggctatata |
347 |
Q |
| |
|
||||||||||||||||| |||||| || |||||||||| ||| ||| |||||| ||||||| |
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|
| T |
25240159 |
gtaaaagctagttacatattagttagatcagttaggagttagttagtctaattgactatata |
25240220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Original strand, 19828681 - 19828717
Alignment:
| Q |
370 |
ttgatgtaacaattctttcataataaatattattttc |
406 |
Q |
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|||||||||||||||||||||| | |||||||||||| |
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|
| T |
19828681 |
ttgatgtaacaattctttcatactcaatattattttc |
19828717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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