View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7973_low_3 (Length: 334)
Name: NF7973_low_3
Description: NF7973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7973_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 17 - 327
Target Start/End: Complemental strand, 9895752 - 9895442
Alignment:
| Q |
17 |
agatagtgatggtatccagatttttaagcttgagcttagagtcatggcaatatcttgacatgtgaattcctttgactattcttttatatgaatatacagt |
116 |
Q |
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| T |
9895752 |
agatagtgatggtatccagatttttaagcttgagcttagagtcatggcaatatcttgacatgtgaattcctttgactattcttttatatgaatatacagt |
9895653 |
T |
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| Q |
117 |
cttattgaaatagtgactgatatgtaaagtctaatcatgggtgtgtgatttgaatcacatttggcactaacatttttctattgttttctccttcgaatcc |
216 |
Q |
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| T |
9895652 |
cttattgaaatagtgcctgatatgtaaagtctaatcatgggtgtgtgatttgaatcacatttggcactaacatttttctattgttttccccttcgaatcc |
9895553 |
T |
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| Q |
217 |
ggtgaagcacatttatgtttcatttcaatttttctgtgcgctgtttaatgtcgttcaattgattctttttatggcatgtgctcttcaatggctatgtagt |
316 |
Q |
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| T |
9895552 |
cgtgaagcacatttatgtttcattttaatttttctgtgcgctgtttaatgtcgttcaattgattctttttatggcatgtgctcttcaatggctatgtagt |
9895453 |
T |
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| Q |
317 |
attctttgttt |
327 |
Q |
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| T |
9895452 |
attctttgttt |
9895442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 172
Target Start/End: Complemental strand, 10519139 - 10519011
Alignment:
| Q |
44 |
gcttgagcttagagtcatggcaatat--cttgacatgtgaattcctttgactattcttttatatgaat-atacagtcttattgaaatagtgactgatatg |
140 |
Q |
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| T |
10519139 |
gcttcagcttatagtcatgtcaatatatcttgacatgtgaattcttttcatttttcttttgtatgaatgcttcagtcttattgcaata--gcttgatatg |
10519042 |
T |
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| Q |
141 |
taaagtctaatcatgggtgtgtgatttgaatc |
172 |
Q |
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| T |
10519041 |
tgaagtctaatcat-ggtgtgtgatttgaatc |
10519011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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