View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7975_high_11 (Length: 294)
Name: NF7975_high_11
Description: NF7975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7975_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 14 - 271
Target Start/End: Original strand, 5434385 - 5434642
Alignment:
| Q |
14 |
agtttggtgttgttgcaagggtcaagatgtacatattgctaatttaattccattccacgccactgccatgcatcatctactaattaattaagccttcgtc |
113 |
Q |
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| T |
5434385 |
agtttggtgttgttgcaagggtcaagatatacatattgctaatttaattccattccacgccattgccatgcatcatctactaattaattaagccttcgtc |
5434484 |
T |
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| Q |
114 |
ttcattttttatttcatgtcaaagcttatttaagcaattaagagaataattaattggacagagagagaagaatcaataaaatagggagaaagaaccatac |
213 |
Q |
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| T |
5434485 |
ttcattttttatttcatgtcaaagcttatttaagcaattcagagaataattaattggacggagagagaagaatcaataaaatagggaaaaagaaccatac |
5434584 |
T |
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| Q |
214 |
tcagatcacggccacaggttccccaatatgagaaaaatgaagggtggaggttgatgga |
271 |
Q |
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| T |
5434585 |
tcggatgacggtgagaggttccccaatatgagaaaaatgaagggtggaggttgatgga |
5434642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 14 - 271
Target Start/End: Complemental strand, 41965490 - 41965233
Alignment:
| Q |
14 |
agtttggtgttgttgcaagggtcaagatgtacatattgctaatttaattccattccacgccactgccatgcatcatctactaattaattaagccttcgtc |
113 |
Q |
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| T |
41965490 |
agtttggtgttgttgcaaggatcaagatatacatattgctaatttaattccattccacgccactgccatgcattatctactaattaattaagccttcgtc |
41965391 |
T |
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| Q |
114 |
ttcattttttatttcatgtcaaagcttatttaagcaattaagagaataattaattggacagagagagaagaatcaataaaatagggagaaagaaccatac |
213 |
Q |
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| T |
41965390 |
ttcattttttatttcatgccaaagtttatttaagcaattaagagaataattaattggacggagagaggagaatcaatggaatagggagaaagaatcatac |
41965291 |
T |
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| Q |
214 |
tcagatcacggccacaggttccccaatatgagaaaaatgaagggtggaggttgatgga |
271 |
Q |
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| T |
41965290 |
tccgatgacggcgagaggttccccaatatgagaaaaatgaaggctggaggttgatgga |
41965233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 68 - 271
Target Start/End: Original strand, 53778085 - 53778288
Alignment:
| Q |
68 |
ccacgccactgccatgcatcatctactaattaattaagccttcgtcttcattttttatttcatgtcaaagcttatttaagcaattaagagaataattaat |
167 |
Q |
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| T |
53778085 |
ccacgccactgccatgcatcatctactaattaattaagccttcgtcttcattttttatttcatgccaaagcttatttaagcaattaagagaataattaat |
53778184 |
T |
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| Q |
168 |
tggacagagagagaagaatcaataaaatagggagaaagaaccatactcagatcacggccacaggttccccaatatgagaaaaatgaagggtggaggttga |
267 |
Q |
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| T |
53778185 |
tggacagagagagaaaaatcaatggaatagggagaaagaaccatactccgatgaccacgagaggttccccaatatgagaaaaatgaagggtggaggttga |
53778284 |
T |
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| Q |
268 |
tgga |
271 |
Q |
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|||| |
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| T |
53778285 |
tgga |
53778288 |
T |
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