View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7975_high_12 (Length: 294)

Name: NF7975_high_12
Description: NF7975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7975_high_12
NF7975_high_12
[»] chr3 (6 HSPs)
chr3 (19-116)||(10820656-10820754)
chr3 (19-116)||(1629944-1630050)
chr3 (19-60)||(1606646-1606687)
chr3 (233-271)||(10820111-10820149)
chr3 (243-271)||(1607144-1607172)
chr3 (243-271)||(1624165-1624193)
[»] chr7 (1 HSPs)
chr7 (243-271)||(18785191-18785219)


Alignment Details
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 10820754 - 10820656
Alignment:
Q  19 atgaagtgaagtccatcaatacctaaatttaaatgatccaagcgtaattatttaaaaa-atgaaattaattgtatgtaagaaagtcacaagtataattt 116  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||| ||||||||| ||||| ||||||||    
T  10820754 atgaagtgaagtccatcaatacctaaatttaaatgatccaagagtaattatttaaaaatatgaaagtaattgtaggtaagaaagccacaattataattt 10820656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 1629944 - 1630050
Alignment:
Q  19 atgaagtgaagtccatcaatacctaaatttaaatgatccaagcgtaattatt-----taaaaaatgaaattaattgt----atgtaagaaagtcacaagt 109  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||     |||||||||||| |||||||    ||||||||||| | |||||    
T  1629944 atgaagtgaagtccatcaatacctaaatttaaatgatccaagagtaattatttaaaataaaaaatgaaagtaattgtatgcatgtaagaaagcctcaagt 1630043  T
Q  110 ataattt 116  Q
    |||||||    
T  1630044 ataattt 1630050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 1606646 - 1606687
Alignment:
Q  19 atgaagtgaagtccatcaatacctaaatttaaatgatccaag 60  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  1606646 atgaagtgaagtccatcaatacctaaatttaaatgatccaag 1606687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 271
Target Start/End: Complemental strand, 10820149 - 10820111
Alignment:
Q  233 taactaaccagctgttgcagagctataagtggtaaaacc 271  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  10820149 taactcaccggctgttgcagagctataagtggtaaaacc 10820111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 1607144 - 1607172
Alignment:
Q  243 gctgttgcagagctataagtggtaaaacc 271  Q
    |||||||||||||||||||||||||||||    
T  1607144 gctgttgcagagctataagtggtaaaacc 1607172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 1624165 - 1624193
Alignment:
Q  243 gctgttgcagagctataagtggtaaaacc 271  Q
    |||||||||||||||||||||||||||||    
T  1624165 gctgttgcagagctataagtggtaaaacc 1624193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 18785191 - 18785219
Alignment:
Q  243 gctgttgcagagctataagtggtaaaacc 271  Q
    |||||||||||||||||||||||||||||    
T  18785191 gctgttgcagagctataagtggtaaaacc 18785219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University