View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7975_high_13 (Length: 237)
Name: NF7975_high_13
Description: NF7975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7975_high_13 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 139 - 237
Target Start/End: Complemental strand, 35402674 - 35402575
Alignment:
| Q |
139 |
gggctgcaaagggagcatatacatcggtagcaaagcctcgacgaacaagtttcatacaatacaccacc-aaccacaatataaataaaatattagtagagc |
237 |
Q |
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| T |
35402674 |
gggctgcaaagggagcatatacatcggtagaaaagcctcgacgaacaagtttcaaacaatacaccaccaaaccacaatataaataaaatattagtagagc |
35402575 |
T |
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Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 35402795 - 35402735
Alignment:
| Q |
18 |
ccttgaaggtacaaccttaaattgttttcaatatttgattgatttgctttctaatacaaac |
78 |
Q |
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| T |
35402795 |
ccttgaaggtacaaccttaaattgttttcaatatttgactgatttgctttctaatacaaac |
35402735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 35391698 - 35391638
Alignment:
| Q |
18 |
ccttgaaggtacaaccttaaattgttttcaatatttgattgatttgctttctaatacaaac |
78 |
Q |
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||||||||||| ||||||||||||||| |||||||||| |||| |||||||||| ||||| |
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| T |
35391698 |
ccttgaaggtatgaccttaaattgtttttaatatttgatcgattagctttctaatgcaaac |
35391638 |
T |
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