View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7975_high_15 (Length: 216)
Name: NF7975_high_15
Description: NF7975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7975_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 16 - 198
Target Start/End: Complemental strand, 42968438 - 42968251
Alignment:
| Q |
16 |
aagaacagctttattagcagatatgctcaatcatccatgcttgggttgggtgggtgctccatggattgtgaca-----attcactagttccacagtgtat |
110 |
Q |
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| T |
42968438 |
aagaacagctttattagcagatatgctcaaccatccatgcttgggttgggtgggtgctccatggattgtgacatgacaattcactagttccacagtgtat |
42968339 |
T |
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| Q |
111 |
ggtattggacataaaactgaatgtctcaaggcctttgtttctttccagcatcatcagcttcctagtggtagtagtttggctgcttttt |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42968338 |
ggtattggacataaaactgaatgtctcaaggcctttgtttctttccagcatcatcagcttcctagtagtagtagtttggctgcttttt |
42968251 |
T |
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