View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7975_high_3 (Length: 569)
Name: NF7975_high_3
Description: NF7975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7975_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 60 - 551
Target Start/End: Complemental strand, 42968746 - 42968251
Alignment:
| Q |
60 |
ggtgtaggtgaagcgtcttaccaactaagttgagcttcattgtcaatttttaatattaattaagaaaataaacttattaggctgaatatttattggccaa |
159 |
Q |
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| T |
42968746 |
ggtgtaggtgaagcgtcttaccaactaagttgagcttcattgtcaatttttaatattaattaagaaaataaacttattaggctgaatatttattggccaa |
42968647 |
T |
|
| Q |
160 |
agtataacnnnnnnnnnncaaaatggcnnnnnnntatttgaaatgatctaaattgggtattacctttacttttgccacatggaattgggatttggaggga |
259 |
Q |
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| T |
42968646 |
agtataacttttttttt-caaaatggcaaaaaaatatttgaaatgatctaaattgggtattacctttacttttgccacatggaattgggatttggaggga |
42968548 |
T |
|
| Q |
260 |
actttatacaagaaccaagaaatggtaaaaataaatcatacacaagatgctcaatatgactgactgttatgtgcttttttcaacagttggagatggttgc |
359 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42968547 |
actttatacaagaaccaagaaatggtaaaaataaatcatacacaagatgctcaatatgactgattgttatgtgcttttttcaacagttggagatggttgc |
42968448 |
T |
|
| Q |
360 |
atgacagaaaagaacagctttattagcagatatgctcaatcatccatgcttgggttgggtgggtgctccatggattgt-----gacaattcactagttcc |
454 |
Q |
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| T |
42968447 |
atgacaggaaagaacagctttattagcagatatgctcaaccatccatgcttgggttgggtgggtgctccatggattgtgacatgacaattcactagttcc |
42968348 |
T |
|
| Q |
455 |
acagtgtatggtattggacataaaactgaatgtctcaaggcctttgtttctttccagcatcatcagcttcctagtggtagtagtttggctgcttttt |
551 |
Q |
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| T |
42968347 |
acagtgtatggtattggacataaaactgaatgtctcaaggcctttgtttctttccagcatcatcagcttcctagtagtagtagtttggctgcttttt |
42968251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 105
Target Start/End: Original strand, 36815804 - 36815843
Alignment:
| Q |
66 |
ggtgaagcgtcttaccaactaagttgagcttcattgtcaa |
105 |
Q |
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| T |
36815804 |
ggtgaagcgtcttaccaactaagttgcacttcattgtcaa |
36815843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 60 - 88
Target Start/End: Complemental strand, 12260630 - 12260602
Alignment:
| Q |
60 |
ggtgtaggtgaagcgtcttaccaactaag |
88 |
Q |
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| T |
12260630 |
ggtgtaggtgaagcgtcttaccaactaag |
12260602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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