View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7975_high_5 (Length: 468)
Name: NF7975_high_5
Description: NF7975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7975_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 17 - 450
Target Start/End: Original strand, 41151378 - 41151810
Alignment:
| Q |
17 |
attcttcagcacaatcatatcagagacaatagataaagggagtatacaaacaccaagattgtttactcagtttaattgaaattgatttaagttcaacgga |
116 |
Q |
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| T |
41151378 |
attcttcagcacaatcatatcagagacaatagataaagggagtatacaaacaccaacattgtttactcagtttaattgaaattgacttaagtttaacg-a |
41151476 |
T |
|
| Q |
117 |
gacggtagttctcatattctcactatcaaagaaatacaaaagagttataaaaattaacttccgatgtttaacatgaacaaatcctaatttttatggattc |
216 |
Q |
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||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
41151477 |
gacagtagttctcatattctcactatcaaagaaacacaaaagagttacaaaaattaacttccgatgtttaacatgaacaaaccctaatttttatggattc |
41151576 |
T |
|
| Q |
217 |
attttctatcatgagagttgcacaagtgatcaagaaatcatcttcgattgttcaccaagagtaatccttaatttctcttgtttactctattaaacctcag |
316 |
Q |
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| T |
41151577 |
attttctatcatgagagttgcacaagtgaccaagaaatcatctttgattgttcaccaagagtaatccttaatttctcttgtttactctattaaacctcag |
41151676 |
T |
|
| Q |
317 |
agattttcacgcaataactcattagaggaagtttgaatcttttccttaatgattcctataactatcaaaggtgtacaatatgattttcaatctaaaaacc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41151677 |
agattttcacgcaataactcattagaggaagtttgaatcttttccttaatgattcctataactatcaaaggtgtacaatatgattttcaatctaaaaacc |
41151776 |
T |
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| Q |
417 |
tcgccaaaagcactcaacacaagagccttcatct |
450 |
Q |
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| T |
41151777 |
tagccaaaagcactcaacacaagagccttcatct |
41151810 |
T |
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