View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7975_high_6 (Length: 426)
Name: NF7975_high_6
Description: NF7975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7975_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 28 - 391
Target Start/End: Original strand, 39115574 - 39115937
Alignment:
| Q |
28 |
atatatattttgaattaaccctaaattaaacccatcgaaccaaattcaaattggtttggtttagacaattggcttataatttaaactagtgaacttgcga |
127 |
Q |
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| T |
39115574 |
atatatattttgaattaaccctaaattaaacccatcgaaccaaattcaaattggtttggtttagacaattggcttataatttaaactagtgaacttgcga |
39115673 |
T |
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| Q |
128 |
acccaacctatttaaagaaaaattattatttattatttttgtgaatatggttttagacttttatctgttcaatcttgaagtgtttcaatttagttcaagt |
227 |
Q |
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| T |
39115674 |
acccaacctatttaaagaaaaattattatttattatttttgtgaatatggttttagacttttatctgttcaatcttgaagtgtttcaatttagttcaagt |
39115773 |
T |
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| Q |
228 |
gcggcagattgaaattatatagttcagtttaaattatgttaaaatatttgtttttcttaaagaatatattagaatatttgttgaattacacgtaatttca |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39115774 |
gcggcagattgaaattatatagttcagtttaaattatgttaaaatatttgtttttcttaaagaatatattagaatatttgttgaattagacgtaatttca |
39115873 |
T |
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| Q |
328 |
aatttacgtttcgaaattttaaaaatgttgtatataacgtgtgacataatgtactgtggtacac |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
39115874 |
aatttacgtttcgaaattttaaaaatgttgtatataacgtgtgacataatgtactgtagtacac |
39115937 |
T |
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