View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7975_high_7 (Length: 373)

Name: NF7975_high_7
Description: NF7975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7975_high_7
NF7975_high_7
[»] chr8 (4 HSPs)
chr8 (1-359)||(7773492-7773851)
chr8 (1-359)||(7810718-7811083)
chr8 (1-359)||(7790132-7790498)
chr8 (36-80)||(32098246-32098290)
[»] scaffold0482 (1 HSPs)
scaffold0482 (1-359)||(1415-1781)
[»] chr6 (12 HSPs)
chr6 (1-95)||(31234830-31234924)
chr6 (1-95)||(31243967-31244061)
chr6 (1-88)||(15035839-15035926)
chr6 (1-87)||(32055980-32056066)
chr6 (114-171)||(1327596-1327653)
chr6 (114-171)||(31234914-31234971)
chr6 (1-95)||(1327512-1327606)
chr6 (1-53)||(1722243-1722295)
chr6 (36-82)||(6294231-6294277)
chr6 (38-79)||(3748637-3748678)
chr6 (114-171)||(31244051-31244107)
chr6 (36-97)||(30915415-30915478)
[»] chr2 (6 HSPs)
chr2 (1-95)||(12072417-12072511)
chr2 (1-97)||(33280331-33280427)
chr2 (114-167)||(12072501-12072554)
chr2 (36-95)||(36059956-36060017)
chr2 (36-97)||(13001597-13001660)
chr2 (36-80)||(32186218-32186262)
[»] chr3 (5 HSPs)
chr3 (1-95)||(4207405-4207499)
chr3 (1-97)||(35202767-35202863)
chr3 (16-95)||(21660428-21660507)
chr3 (117-173)||(21660500-21660556)
chr3 (31-95)||(19965931-19965997)
[»] chr5 (5 HSPs)
chr5 (1-88)||(524906-524993)
chr5 (114-173)||(37029034-37029093)
chr5 (119-173)||(524851-524905)
chr5 (36-95)||(138096-138157)
chr5 (36-94)||(27351301-27351361)
[»] chr7 (5 HSPs)
chr7 (1-95)||(2445827-2445919)
chr7 (36-97)||(9479079-9479142)
chr7 (36-97)||(40738040-40738103)
chr7 (31-80)||(32956722-32956771)
chr7 (114-166)||(2445785-2445837)
[»] chr4 (5 HSPs)
chr4 (38-95)||(43154839-43154898)
chr4 (37-95)||(16072547-16072607)
chr4 (134-171)||(41305723-41305760)
chr4 (36-80)||(22423636-22423680)
chr4 (38-95)||(27632352-27632411)
[»] chr1 (3 HSPs)
chr1 (36-95)||(26486416-26486477)
chr1 (36-95)||(27703580-27703641)
chr1 (38-95)||(32810402-32810459)


Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 7773492 - 7773851
Alignment:
Q  1 aaccaccaccaatccaacatacatctatcctttatactctagttctcctttttggacaaaaattttatgctatcaaaccatccaatttgtataattatac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  7773492 aaccaccaccaatccaacatacatctatcctttatactctagttctcctttttggacaagaattttatgctatcaaaccatccaatttgtataattatac 7773591  T
Q  101 atnnnnnnntcttatttgtataatcacttagtgaatcaatttaaaaaattatttcaaagaatcacaataatccnnnnnnnnnnnnna-tagaattgtgta 199  Q
    ||       ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |               ||||||||||||    
T  7773592 ataaaaaaatcttatttgtataatcacttagtgaattaatttaaaaaattatttcaaagaatcacaataattctttgttttttttgtgtagaattgtgta 7773691  T
Q  200 cataagaacggccgacactcgatatagataaacactagcaagcaagaaaagctaaagaaacaaatagcctaattaatcaatagagttaagaccgaaatat 299  Q
    |||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7773692 cataaggacggccgaccctcggtatagataaacactagcaagcaagaaaagctaaagaaacaaatagcctaattaatcaatagagttaagaccgaaatat 7773791  T
Q  300 cacttgatccactagttaaaatcaaaacataaaattacaagatggtggccaaggactaaa 359  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7773792 tacttgatccactagttaaaatcaaaacataaaattacaagatggtggccaaggactaaa 7773851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 7810718 - 7811083
Alignment:
Q  1 aaccaccaccaatccaacatacatctatcctttatactctagttctcctttttggacaaaaattttatgctatcaaaccatccaatttgtataattatac 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  7810718 aaccaccaccaatccaacatacatctatcctttatactgtagttctcctttgtggacaaaaattttattctatcaaaccatccaatttgtataattatac 7810817  T
Q  101 atnnnnnnntcttatttgtataatcacttagtgaatcaatttaaaaaattatttcaaagaatcacaataatccnnnnnnnnnnnnnat-------agaat 193  Q
    ||       ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||              |       |||||    
T  7810818 ataaaaaaatcttatttgtataatcacttagtgaattaatttaaaaaattatttcaaagaatcacaataatcctttgttttttttttttttttgtagaat 7810917  T
Q  194 tgtgtacataagaacggccgacactcgatatagataaacactagcaagcaagaaaagctaaagaaacaaatagcctaattaatcaatagagttaagaccg 293  Q
    |||||| ||||| ||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7810918 tgtgtatataaggacgaccgaccctcggtatagataaacactagcaagcaagaaaagctaaagaaacaaatagcctaattaatcaatagagttaagaccg 7811017  T
Q  294 aaatatcacttgatccactagttaaaatcaaaacataaaattacaagatggtggccaaggactaaa 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7811018 aaatatcacttgatccactagttaaaatcaaaacataaaattacaagatggtggccaaggactaaa 7811083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 7790132 - 7790498
Alignment:
Q  1 aaccaccaccaatccaacatacatctatcctttatactctagttctcctttttggacaaaaattttatgctatcaaaccatccaatttgtataattatac 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  7790132 aaccaccaccaatccaacatacatctatcctttatactgtagttctcctttgtggacaaaaattttattctatcaaaccatccaatttgtataattatac 7790231  T
Q  101 atnnnnnnntcttatttgtataatcacttagtgaatcaatttaaaaaattatttcaaagaatcacaataatccnnnnnnnnnnnnnat--------agaa 192  Q
    ||       ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||              |        ||||    
T  7790232 ataaaaaaatcttatttgtataatcacttagtgaattaatttaaaaaattatttcaaagaatcacaataatcctttgtttttttttttttttttgtagaa 7790331  T
Q  193 ttgtgtacataagaacggccgacactcgatatagataaacactagcaagcaagaaaagctaaagaaacaaatagcctaattaatcaatagagttaagacc 292  Q
    ||||||| ||||| ||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7790332 ttgtgtatataaggacgaccgaccctcggtatagataaacactagcaagcaagaaaagctaaagaaacaaatagcctaattaatcaatagagttaagacc 7790431  T
Q  293 gaaatatcacttgatccactagttaaaatcaaaacataaaattacaagatggtggccaaggactaaa 359  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7790432 gaaatatcacttgatccactagttaaaatcaaaacataaaattacaagatggtggccaaggactaaa 7790498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 32098290 - 32098246
Alignment:
Q  36 actctagttctcctttttggacaaaaattttatgctatcaaacca 80  Q
    ||||||||| ||||||||||||| |||||| ||||||||||||||    
T  32098290 actctagttatcctttttggacataaatttgatgctatcaaacca 32098246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 1781 - 1415
Alignment:
Q  1 aaccaccaccaatccaacatacatctatcctttatactctagttctcctttttggacaaaaattttatgctatcaaaccatccaatttgtataattatac 100  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  1781 aaccaccaccaatccaacatacatctatcctttatattgtagttctcctttgtggacaaaaattttattctatcaaaccatccaatttgtataattatac 1682  T
Q  101 atnnnnnnntcttatttgtataatcacttagtgaatcaatttaaaaaattatttcaaagaatcacaataatccnnnnnnnnnnnnnat--------agaa 192  Q
    ||       ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||              |        ||||    
T  1681 ataaaaaaatcttatttgtataatcacttagtgaattaatttaaaaaattatttcaaagaatcacaataatcctttgtttttttttttttttttgtagaa 1582  T
Q  193 ttgtgtacataagaacggccgacactcgatatagataaacactagcaagcaagaaaagctaaagaaacaaatagcctaattaatcaatagagttaagacc 292  Q
    ||||||| ||||| ||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1581 ttgtgtatataaggacgaccgaccctcggtatagataaacactagcaagcaagaaaagctaaagaaacaaatagcctaattaatcaatagagttaagacc 1482  T
Q  293 gaaatatcacttgatccactagttaaaatcaaaacataaaattacaagatggtggccaaggactaaa 359  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1481 gaaatatcacttgatccactagttaaaatcaaaacataaaattacaagatggtggccaaggactaaa 1415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 31234830 - 31234924
Alignment:
Q  1 aaccaccaccaatccaacatacatctatcctttatactctagttctcctttttggacaaaaattttatgctatcaaaccatccaatttgtataat 95  Q
    ||||||||| |||||||||||||| ||||||||| ||||||||||| |||||| ||||| ||||  |||||||||||||||||||||||||||||    
T  31234830 aaccaccacaaatccaacatacatttatcctttagactctagttctactttttagacaagaattcaatgctatcaaaccatccaatttgtataat 31234924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 31243967 - 31244061
Alignment:
Q  1 aaccaccaccaatccaacatacatctatcctttatactctagttctcctttttggacaaaaattttatgctatcaaaccatccaatttgtataat 95  Q
    ||||||||| |||||||||||||| ||||||||| ||||||||||| |||||| ||||| ||||  |||||||||||||||||||||||||||||    
T  31243967 aaccaccacaaatccaacatacatttatcctttagactctagttctactttttagacaagaattcaatgctatcaaaccatccaatttgtataat 31244061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 15035926 - 15035839
Alignment:
Q  1 aaccaccaccaatccaacatacatctatcctttatactctagttctcctttttggacaaaaattttatgctatcaaaccatccaattt 88  Q
    |||||||||||||||||||| |||||||||| || ||| |||||||||||||||||||| ||||  ||||||||||||||| ||||||    
T  15035926 aaccaccaccaatccaacattcatctatcctatagactttagttctcctttttggacaagaattcaatgctatcaaaccattcaattt 15035839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 32055980 - 32056066
Alignment:
Q  1 aaccaccaccaatccaacatacatctatcctttatactctagttctcctttttggacaaaaattttatgctatcaaaccatccaatt 87  Q
    |||||||||| || |||||| |||||||||| || |||||||||||| |||||| |||| ||||  ||| |||||||||||||||||    
T  32055980 aaccaccacctattcaacatccatctatcctctaaactctagttctcatttttgaacaagaattcaatgttatcaaaccatccaatt 32056066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 171
Target Start/End: Original strand, 1327596 - 1327653
Alignment:
Q  114 atttgtataatcacttagtgaatcaatttaaaaaattatttcaaagaatcacaataat 171  Q
    ||||||||||||||||| | |||||||||| |||| ||||||||| ||||||||||||    
T  1327596 atttgtataatcacttaatcaatcaatttagaaaactatttcaaataatcacaataat 1327653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 171
Target Start/End: Original strand, 31234914 - 31234971
Alignment:
Q  114 atttgtataatcacttagtgaatcaatttaaaaaattatttcaaagaatcacaataat 171  Q
    ||||||||||||||||| | ||||||||| ||||  ||||||||||||||||||||||    
T  31234914 atttgtataatcacttaatcaatcaatttgaaaagctatttcaaagaatcacaataat 31234971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 1327512 - 1327606
Alignment:
Q  1 aaccaccaccaatccaacatacatctatcctttata-ctctagttctcctttttggacaaaaattttatgctatcaaaccatccaatttgtataat 95  Q
    ||||||||| |||| ||||||||||||| ||||||| | |  |||||||||||||||||| ||||  |||||||| |  |||||||||||||||||    
T  1327512 aaccaccacaaatctaacatacatctattctttataccccctgttctcctttttggacaataattcaatgctatc-attcatccaatttgtataat 1327606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 1722295 - 1722243
Alignment:
Q  1 aaccaccaccaatccaacatacatctatcctttatactctagttctccttttt 53  Q
    |||||| |||||||||| || ||||||||||||| ||||| ||||||||||||    
T  1722295 aaccactaccaatccaatatccatctatcctttagactctggttctccttttt 1722243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 82
Target Start/End: Original strand, 6294231 - 6294277
Alignment:
Q  36 actctagttctcctttttggacaaaaattttatgctatcaaaccatc 82  Q
    ||||||||||| |||||||| || |||||| ||||||||||||||||    
T  6294231 actctagttctactttttgggcataaatttgatgctatcaaaccatc 6294277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 79
Target Start/End: Complemental strand, 3748678 - 3748637
Alignment:
Q  38 tctagttctcctttttggacaaaaattttatgctatcaaacc 79  Q
    ||||||||| ||||||||||| |||||| |||||||||||||    
T  3748678 tctagttctactttttggacataaatttgatgctatcaaacc 3748637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 171
Target Start/End: Original strand, 31244051 - 31244107
Alignment:
Q  114 atttgtataatcacttagtgaatcaatttaaaaaattatttcaaagaatcacaataat 171  Q
    ||||||||||||||||| | |||||||| ||||  | |||||||||||||||||||||    
T  31244051 atttgtataatcacttaatcaatcaattgaaaagct-atttcaaagaatcacaataat 31244107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 30915478 - 30915415
Alignment:
Q  36 actctagttctcctttttggacaaaaattttatgctatcaaaccatc--caatttgtataatta 97  Q
    ||||||||||| |||| |||||| |||||| |||||||||||||  |  |||||||||||||||    
T  30915478 actctagttctactttctggacataaatttgatgctatcaaacccccatcaatttgtataatta 30915415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 12072417 - 12072511
Alignment:
Q  1 aaccaccaccaatccaacatacatctatcctttatactctagttctcctttttggacaaaaattttatgctatcaaaccatccaatttgtataat 95  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||  ||| ||||||||||| |||||| ||||||    
T  12072417 aaccaccaccaatccaacatacatctatcctttagactgtagttctcctttttggacaagaattcaatgttatcaaaccattcaatttatataat 12072511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 33280427 - 33280331
Alignment:
Q  1 aaccaccaccaatccaacatacatctatcctttatactctagttctcctttttggacaaaaattttatgctatcaaaccatccaatttgtataatta 97  Q
    ||||||||| ||||||||||||||||||  |||||||| ||||| |||||| ||||||| ||||  | ||||||||| |||||||||| ||||||||    
T  33280427 aaccaccacaaatccaacatacatctattatttatactttagttatcctttctggacaagaattcaacgctatcaaatcatccaatttctataatta 33280331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 167
Target Start/End: Original strand, 12072501 - 12072554
Alignment:
Q  114 atttgtataatcacttagtgaatcaatttaaaaaattatttcaaagaatcacaa 167  Q
    |||| |||||||||||| | |||||||||||||| |||||||||||||||||||    
T  12072501 atttatataatcacttaatcaatcaatttaaaaagttatttcaaagaatcacaa 12072554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 95
Target Start/End: Complemental strand, 36060017 - 36059956
Alignment:
Q  36 actctagttctcctttttggacaaaaattttatgctatcaaaccatc--caatttgtataat 95  Q
    ||||||||||| |||||| ||||||||||| |||||||||||||| |  |||||||||||||    
T  36060017 actctagttctactttttagacaaaaatttgatgctatcaaaccaccatcaatttgtataat 36059956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 13001597 - 13001660
Alignment:
Q  36 actctagttctcctttttggacaaaaattttatgctatcaaacca--tccaatttgtataatta 97  Q
    |||||| |||||||||||  ||| |||||| ||||||||||||||   ||||||||||||||||    
T  13001597 actctaattctcctttttatacataaatttgatgctatcaaaccacccccaatttgtataatta 13001660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 32186262 - 32186218
Alignment:
Q  36 actctagttctcctttttggacaaaaattttatgctatcaaacca 80  Q
    ||||||||||| |||||| |||| |||||| ||||||||||||||    
T  32186262 actctagttctactttttagacataaatttgatgctatcaaacca 32186218  T

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Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 4207499 - 4207405
Alignment:
Q  1 aaccaccaccaatccaacatacatctatcctttatactctagttctcctttttggacaaaaattttatgctatcaaaccatccaatttgtataat 95  Q
    |||||||||||||| ||||| ||| |||| |||  |||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||    
T  4207499 aaccaccaccaatcgaacatgcatatatcatttcgactctagttctcctttttggacaagaattcaatgctatcaaaccatccaatttgtataat 4207405  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 35202863 - 35202767
Alignment:
Q  1 aaccaccaccaatccaacatacatctatcctttatactctagttctcctttttggacaaaaattttatgctatcaaaccatccaatttgtataatta 97  Q
    |||||||||||||||||||| |||||||||| || ||| ||||| ||||||||||| || ||||| ||  |||||||||||||||||||||||||||    
T  35202863 aaccaccaccaatccaacattcatctatcctatagactttagttatcctttttggataagaatttaattttatcaaaccatccaatttgtataatta 35202767  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 21660428 - 21660507
Alignment:
Q  16 aacatacatctatcctttatactctagttctcctttttggacaaaaattttatgctatcaaaccatccaatttgtataat 95  Q
    ||||||||||||||||||| ||| || ||||||||||||||||| ||||| |||||||||||||||| ||| ||||||||    
T  21660428 aacatacatctatcctttagactatatttctcctttttggacaagaatttaatgctatcaaaccatcaaatctgtataat 21660507  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 117 - 173
Target Start/End: Original strand, 21660500 - 21660556
Alignment:
Q  117 tgtataatcacttagtgaatcaatttaaaaaattatttcaaagaatcacaataatcc 173  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  21660500 tgtataatcacttaatcaatcaatttaaaaaattatttcaaagaatcacaataatcc 21660556  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 19965997 - 19965931
Alignment:
Q  31 tttatactctagttctcctttttggacaaaaattttatgctatcaaacca--tccaatttgtataat 95  Q
    |||| |||||| |||||||||||||||| |||| | ||||||||||||||   ||||||||||||||    
T  19965997 tttaaactctaattctcctttttggacataaatctgatgctatcaaaccactgccaatttgtataat 19965931  T

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Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 524993 - 524906
Alignment:
Q  1 aaccaccaccaatccaacatacatctatcctttatactctagttctcctttttggacaaaaattttatgctatcaaaccatccaattt 88  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| || ||||  ||||| |||||||||| |||||    
T  524993 aaccaccaccaatccaacacacatctatcctttagactctagttctcctttttggaaaagaattcaatgctctcaaaccatctaattt 524906  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 173
Target Start/End: Complemental strand, 37029093 - 37029034
Alignment:
Q  114 atttgtataatcacttagtgaatcaatttaaaaaattatttcaaagaatcacaataatcc 173  Q
    ||||||||||||||||| | ||||||||||||||  ||||||||||||| ||||||||||    
T  37029093 atttgtataatcacttaatcaatcaatttaaaaagctatttcaaagaattacaataatcc 37029034  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 173
Target Start/End: Complemental strand, 524905 - 524851
Alignment:
Q  119 tataatcacttagtgaatcaatttaaaaaattatttcaaagaatcacaataatcc 173  Q
    |||||||||||| | ||||||||||||||| ||||| ||||||||||||| ||||    
T  524905 tataatcacttaatcaatcaatttaaaaaactattttaaagaatcacaattatcc 524851  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 95
Target Start/End: Original strand, 138096 - 138157
Alignment:
Q  36 actctagttctcctttttggacaaaaattttatgctatcaaaccatc--caatttgtataat 95  Q
    ||||||||||| ||||| ||||| |||||| |||||||||||||| |  |||||||||||||    
T  138096 actctagttctacttttcggacataaatttgatgctatcaaaccaccatcaatttgtataat 138157  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 94
Target Start/End: Original strand, 27351301 - 27351361
Alignment:
Q  36 actctagttctcctttttggacaaaaattttatgctatcaaacca--tccaatttgtataa 94  Q
    |||||||||||||||| || ||| ||||||  |||||||||||||  ||||||||||||||    
T  27351301 actctagttctcctttctgaacataaatttggtgctatcaaaccacctccaatttgtataa 27351361  T

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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 2445919 - 2445827
Alignment:
Q  1 aaccaccaccaatccaacatacatctatcctttatactctagttctcctttttggacaaaaattttatgctatcaaaccatccaatttgtataat 95  Q
    |||||||||||||||||| |||||||||||| || ||||||||  ||||||||  |||| ||||| ||||||||||||||| |||||||||||||    
T  2445919 aaccaccaccaatccaacttacatctatcctctagactctagt--tcctttttttacaagaatttgatgctatcaaaccattcaatttgtataat 2445827  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 9479079 - 9479142
Alignment:
Q  36 actctagttctcctttttggacaaaaattttatgctatcaaaccatc--caatttgtataatta 97  Q
    ||||||||||| |||| |||||| |||||| |||||||||||||| |  |||||||||||||||    
T  9479079 actctagttctactttctggacataaatttgatgctatcaaaccaccatcaatttgtataatta 9479142  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 40738103 - 40738040
Alignment:
Q  36 actctagttctcctttttggacaaaaattttatgctatcaaaccatc--caatttgtataatta 97  Q
    ||||||||||| |||||| |||| |||||| |||||||||||||| |  |||||||||||||||    
T  40738103 actctagttctacttttttgacataaatttgatgctatcaaaccaccatcaatttgtataatta 40738040  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 32956722 - 32956771
Alignment:
Q  31 tttatactctagttctcctttttggacaaaaattttatgctatcaaacca 80  Q
    |||| |||||||||||||||| |||||| |||| | ||||||||||||||    
T  32956722 tttagactctagttctcctttctggacataaatctgatgctatcaaacca 32956771  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 2445837 - 2445785
Alignment:
Q  114 atttgtataatcacttagtgaatcaatttaaaaaattatttcaaagaatcaca 166  Q
    ||||||||||||||||| |  ||||| ||||||  ||||||||||||||||||    
T  2445837 atttgtataatcacttaatctatcaaattaaaaggttatttcaaagaatcaca 2445785  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 43154898 - 43154839
Alignment:
Q  38 tctagttctcctttttggacaaaaattttatgctatcaaaccatc--caatttgtataat 95  Q
    ||||||||| ||||||||||| |||||| |||||||||||||| |  |||||||||||||    
T  43154898 tctagttctactttttggacataaatttgatgctatcaaaccaccatcaatttgtataat 43154839  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 16072547 - 16072607
Alignment:
Q  37 ctctagttctcctttttggacaaaaattttatgctatcaaaccatcc--aatttgtataat 95  Q
    |||||| ||||||||||| ||| |||||| || ||||||||||||||  ||||||||||||    
T  16072547 ctctagatctcctttttgtacataaatttgatcctatcaaaccatccctaatttgtataat 16072607  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 41305723 - 41305760
Alignment:
Q  134 aatcaatttaaaaaattatttcaaagaatcacaataat 171  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  41305723 aatcaatttagaaaattatttcaaagaatcacagtaat 41305760  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 22423636 - 22423680
Alignment:
Q  36 actctagttctcctttttggacaaaaattttatgctatcaaacca 80  Q
    ||||||||||| |||| |||||| |||||| ||||||||||||||    
T  22423636 actctagttctactttctggacataaatttgatgctatcaaacca 22423680  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 27632352 - 27632411
Alignment:
Q  38 tctagttctcctttttggacaaaaattttatgctatcaaaccatcc--aatttgtataat 95  Q
    ||||||||||||||||| ||| |||||| || ||||||||||| ||  ||||||||||||    
T  27632352 tctagttctcctttttgtacataaatttgatcctatcaaaccacccctaatttgtataat 27632411  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 95
Target Start/End: Complemental strand, 26486477 - 26486416
Alignment:
Q  36 actctagttctcctttttggacaaaaattttatgctatcaaaccatc--caatttgtataat 95  Q
    ||||||||||| |||| |||| | |||||| ||||||||||||||||  |||||||||||||    
T  26486477 actctagttctactttctggaaataaatttgatgctatcaaaccatcatcaatttgtataat 26486416  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 95
Target Start/End: Complemental strand, 27703641 - 27703580
Alignment:
Q  36 actctagttctcctttttggacaaaaattttatgctatcaaacca--tccaatttgtataat 95  Q
    |||||||||||| |||||| ||| |||||| ||||||||||||||   ||||||||||||||    
T  27703641 actctagttctcttttttgaacataaatttgatgctatcaaaccacccccaatttgtataat 27703580  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 32810459 - 32810402
Alignment:
Q  38 tctagttctcctttttggacaaaaattttatgctatcaaaccatccaatttgtataat 95  Q
    ||||||||| |||||||||||| ||||| ||||||| |||| ||| |||||| |||||    
T  32810459 tctagttcttctttttggacaagaatttaatgctattaaactatctaatttgaataat 32810402  T

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