View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7975_high_8 (Length: 364)
Name: NF7975_high_8
Description: NF7975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7975_high_8 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 31045057 - 31045403
Alignment:
| Q |
1 |
taagcaaagagctcagataaagaccataaacagtgtgacatgaatcatcacatgcaaggtatgcagcagtgtatgtaaaggaaaagttgctcttctccta |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
31045057 |
taagcaaagagctcagataaagaccataaacagtctgacatgaatcatctcatgcaaggtattcagcagtgtatgtaaaggaaaagttgctattctccta |
31045156 |
T |
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| Q |
101 |
aagcctcaccaaacgaagtttgcggcatataacaagtcttcatcttcacattaaaaactttttgtatatgtaaattaagattcaaaatttaaactcatgc |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31045157 |
aagcctcaccaaacgaagcttgcggcatataacaagtcttcatcttcacattaaaaactttttgtatatgtaaattaagattcaaaatttaaactcatgc |
31045256 |
T |
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| Q |
201 |
aaacatgttcatatagccctctctttctctaaaattccattgaattatgagtacatattttatccgtatccaattgtcacaacatacatttaatttaact |
300 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31045257 |
aaacatgttcatataaccctctctttctctaaaattccattgaattatgagtacatattttatccgtatccaattgtcacaacatacatttaatttaact |
31045356 |
T |
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| Q |
301 |
ctagacttctacaacttcatctatcctctccgcacacttctacaact |
347 |
Q |
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| T |
31045357 |
ctagacttctacaacttcatctatcctctccgcacacttctacaact |
31045403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 172330 - 172005
Alignment:
| Q |
1 |
taagcaaagagctcagataaagaccataaaca--gtgtgacatgaatcatcacatgcaa--ggtatgca---gcagtgtatgta-aaggaaaa-gttgct |
91 |
Q |
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|||||||| ||||||||||||||||||||||| |||||||||||||||||||||| || ||| || | | | || | || |||||||| |||||| |
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| T |
172330 |
taagcaaatagctcagataaagaccataaacaaagtgtgacatgaatcatcacatgaaacgggtgtgtaaaggaaacgtttctagaaggaaaatgttgct |
172231 |
T |
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| Q |
92 |
cttctcctaaagcctcaccaaacgaagtttgc------ggcatataacaagtcttcatcttcacattaaaaactttttgtatatgtaaattaagattcaa |
185 |
Q |
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|||||| ||||||| |||||||||||| ||| | |||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
172230 |
cttctcttaaagccacaccaaacgaagcttgattagaagatatataacaggtcttcatcttcacattaaaaacattttgtatatgtaaattaag-ttcaa |
172132 |
T |
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| Q |
186 |
aatttaaactcatgcaaacatgttcatatagccctctctttctctaaaattccattgaattatgagtacatattttatccgtatccaattgtcaca-aca |
284 |
Q |
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|||| || |||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| ||| |
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| T |
172131 |
aattcaatctcatgcaaacatgttcatataatcctctctttctctgaaattccattgaattattagtacatatttcatccgtatccaattgtcacacaca |
172032 |
T |
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| Q |
285 |
tacatttaatttaactctagacttcta |
311 |
Q |
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| T |
172031 |
ttcatttaattaaactctacacttcta |
172005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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