View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7975_low_1 (Length: 712)
Name: NF7975_low_1
Description: NF7975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7975_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 457; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 20 - 701
Target Start/End: Original strand, 3455796 - 3456478
Alignment:
| Q |
20 |
atgaagagcaaagaaaactctattttaaacaagtttcttcagaaacattaagcagcttttggtttaatataaaattataaagttgtatataaccttgcag |
119 |
Q |
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||||||||||||||| ||||||||||||| |||||||| |||||| ||| || ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3455796 |
atgaagagcaaagaatactctattttaaagaagtttctgcagaaattttatgctgcttttggtttaatataaaattataaagttgcatataaccttgcaa |
3455895 |
T |
|
| Q |
120 |
catgagcttcaaaagaaatcattacctcttcttgtaaacttggaaaatgattatagataaaacgatagcgcaactctttgtcctggaagagataatcaga |
219 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3455896 |
caagagcttcaaaagaaatcattacctcttcttgtaaacttggaaaatgattatagataaaacgatagcgcaactctttgtcctggaagagataatcaga |
3455995 |
T |
|
| Q |
220 |
atgttaaaacagaaatcctggttcaaatgaaaatagatacgnnnnnnnnnnnnnnnnnnnntacgatatttgatca--aagttaagacaaatagtccttt |
317 |
Q |
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||||||||||||||||||||||||||| |||||||||||| || |||||||||||| ||||| || ||| ||||||||| |
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| T |
3455996 |
atgttaaaacagaaatcctggttcaaacaaaaatagatacgaaaaacacaaacaaaaaacatatgatatttgatcacaaagttcagccaa-tagtccttt |
3456094 |
T |
|
| Q |
318 |
cgtctctcactgcagagtagctacttagggtttcaacttacaactcatctttaaatactacggtccagtttacgacactgagtcggccttttagattgaa |
417 |
Q |
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||||||| ||||||||||||||||||||| |||||| ||||||||||| ||||||||||| |||||| ||||| ||||||||||||||||| | |||||| |
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| T |
3456095 |
cgtctctgactgcagagtagctacttaggttttcaaattacaactcatgtttaaatactatggtccactttacaacactgagtcggcctttaaaattgaa |
3456194 |
T |
|
| Q |
418 |
aaattcataacatttgcaaaaacacatttcgcatccaaaatgatgaatcaactaaaacttcaatagaaaatatataatttaactattacacatgacatgg |
517 |
Q |
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| T |
3456195 |
aaattcattacatttgcaaaaacaaatttagcatccaaaatgatgaatcaactaaaacttaaatagaagatatataatttaaccattacacataacatgg |
3456294 |
T |
|
| Q |
518 |
aagtattgaattatatgtcatgctatacaccaagattttttgcaagtaatgtcaggtaaagaagaaataaacacaatactcactgtaatatacctgatgg |
617 |
Q |
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|||| |||||||||||| || || |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3456295 |
aagttttgaattatatgacaagccatacaccaagtttttttgcaagtaatatcaggtaaagaagaaataaacacaatactcactgtaatatacctgatgg |
3456394 |
T |
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| Q |
618 |
ccaataacaacaggtgcattttgaagtataaaatgtaagaaattatctgctctcttaagaatctgtgacagttcctccacaggt |
701 |
Q |
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| T |
3456395 |
ccaataacaacaggtgcattttgaagtataaaatgtaagaaattatctgctctcttaagaatctgtgacagttcctccacaggt |
3456478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 577 - 701
Target Start/End: Original strand, 3480741 - 3480865
Alignment:
| Q |
577 |
agaagaaataaacacaatactcactgtaatatacctgatggccaataacaacaggtgcattttgaagtataaaatgtaagaaattatctgctctcttaag |
676 |
Q |
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|||||||| |||| ||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3480741 |
agaagaaagaaactaaatactcgttgtagtatacctgatggcctataacaacaggtgcattttgaagtataaaatgtaagaaattatctgctctcttaag |
3480840 |
T |
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| Q |
677 |
aatctgtgacagttcctccacaggt |
701 |
Q |
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| T |
3480841 |
aatctgtgacagttcctccacaggt |
3480865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 136 - 207
Target Start/End: Original strand, 3480517 - 3480588
Alignment:
| Q |
136 |
aatcattacctcttcttgtaaacttggaaaatgattatagataaaacgatagcgcaactctttgtcctggaa |
207 |
Q |
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| T |
3480517 |
aatcattacctcctcttgtaaacttggaaaatgattatagataaagcgataccgcaactctttgtcctggaa |
3480588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 8e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 610 - 701
Target Start/End: Complemental strand, 48694426 - 48694335
Alignment:
| Q |
610 |
cctgatggccaataacaacaggtgcattttgaagtataaaatgtaagaaattatctgctctcttaagaatctgtgacagttcctccacaggt |
701 |
Q |
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|||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||| ||||| || || ||||| || |||||| |
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| T |
48694426 |
cctgatggccaataacaacaggagcattttggagtataaaatgcaagaaattatctgctctcttcagaatttgagagagttcttcaacaggt |
48694335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 140 - 204
Target Start/End: Complemental strand, 48694487 - 48694423
Alignment:
| Q |
140 |
attacctcttcttgtaaacttggaaaatgattatagataaaacgatagcgcaactctttgtcctg |
204 |
Q |
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|||||||| || || ||||||||||| || || |||||||| ||||| ||||||||||||||||| |
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| T |
48694487 |
attacctcctcatgcaaacttggaaagtggttgtagataaagcgataccgcaactctttgtcctg |
48694423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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