View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7975_low_11 (Length: 318)
Name: NF7975_low_11
Description: NF7975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7975_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 22 - 303
Target Start/End: Original strand, 49627869 - 49628147
Alignment:
| Q |
22 |
ttttaattcaaaaccttaaaatataaatttatggatctctcatctatgggtgttccacattcacttttttatccaatgtgagatatattattactcacgt |
121 |
Q |
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| T |
49627869 |
ttttaattcaaaaccttaaaatataaatttatggatctctcatctataggtgttccacattcacttttttatccaatgtgagatatatta---cttacgc |
49627965 |
T |
|
| Q |
122 |
ttgatgtaccaacaatctccacctcaaatgtgagttcatctattatgtaatatatcccccttaaacgaagttttttcatcaacttataccgccgttaaca |
221 |
Q |
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||||| |||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49627966 |
ttgatataccaacaatctccgcctcaagtgtgagttcatctattatgtaatatatctcccttaaacgaagttttttcatcaacttataccgccgttaaca |
49628065 |
T |
|
| Q |
222 |
gccaccacatcaaccggactcgccatcagaaaatattggtcaggaagactttcgacacaagtagctggtcaaacccttcatc |
303 |
Q |
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||||||||||||||||||||| || ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
49628066 |
gccaccacatcaaccggactcaccgtcagaaaatcttggtcaagaagactttcgacacaagtagctggtcaaacccttcatc |
49628147 |
T |
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