View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7975_low_12 (Length: 310)
Name: NF7975_low_12
Description: NF7975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7975_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 37065530 - 37065817
Alignment:
| Q |
1 |
ccaataaaaagataggtcaattcattgggaggggattgtctcctatgaaagtttcatccaatgaaatctcctccactcannnnnnnnnnnnnngcaatat |
100 |
Q |
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| T |
37065530 |
ccaataaaaagataggtcaattcattgggaggggattgtctcctatgaaagtttcatccaatgaaatctcctccactcatttttattttttt-gcaatat |
37065628 |
T |
|
| Q |
101 |
gtaatttaaattattttnnnnnnnnnnttaagggtagggatcagcgtcagtgaatttcaaatgggagaggattcgtgcctcaattcatttgggtagaaga |
200 |
Q |
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| T |
37065629 |
gtaatttaaattattt-aaaaaaaaaattaagggtagggatcagcgtcagtgaatttcaaatgggagaggattcgtgcctcaattcatttgggtaaaaga |
37065727 |
T |
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| Q |
201 |
gattgagtaacagctaacttttaaaaataagagggttaattttttgtccaaaatcacctagatcactttttcctattcttttgtttgaat |
290 |
Q |
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| T |
37065728 |
gattgagtaacagctaacttttaaaaataagagggttaattttttgtccaaaatcacctagatcactttttcctattcttttgtttgaat |
37065817 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 11136481 - 11136433
Alignment:
| Q |
31 |
ggggattgtctcctatgaaagtttcatccaatgaaatctcctccactca |
79 |
Q |
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||||||||||||| | ||||| |||||||||| ||||||||||||||| |
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| T |
11136481 |
ggggattgtctcccgtaaaagtgtcatccaatggaatctcctccactca |
11136433 |
T |
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