View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7975_low_16 (Length: 222)
Name: NF7975_low_16
Description: NF7975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7975_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 6070999 - 6070811
Alignment:
| Q |
17 |
gaagagcagctcttgaagtaattgaagaaaacaaggtaaggggaagaaaaactgacattgttttcaacacagttaaattactatctaatgaaatgtaacc |
116 |
Q |
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| T |
6070999 |
gaagagaagctcttgatgtaattgaagaaaacaaggtaaggggaagaaaaactgacatttttttcaacacagttaaattactatctaataaaacgtaacc |
6070900 |
T |
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| Q |
117 |
aattaattggataaattttactttcttgtcctgcaggggagtagcttcattgaaggaataatgttggatttgtctcaaaataatgattt |
205 |
Q |
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| T |
6070899 |
aattaattggataaattttactttcttgtcctgcaggggagtagcttcattgaaggcataatgttggatttgtctcaaaataatgattt |
6070811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 205
Target Start/End: Complemental strand, 6195185 - 6195088
Alignment:
| Q |
108 |
aatgtaaccaattaattggataaattttactttcttgtcctg-caggggagtagcttcattgaaggaataatgttggatttgtctcaaaataatgattt |
205 |
Q |
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| T |
6195185 |
aatgtagctaattgattggatacattt-actttcttctcttgtcaggggagtagctcaattgaaggcataacattggatttgtcacaaaataatgattt |
6195088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 37451815 - 37451866
Alignment:
| Q |
150 |
caggggagtagcttcattgaaggaataatgttggatttgtctcaaaataatg |
201 |
Q |
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| T |
37451815 |
caggggagtagctcaattgaagggataatgttggatttgtctcaaaacaatg |
37451866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 37451701 - 37451735
Alignment:
| Q |
21 |
agcagctcttgaagtaattgaagaaaacaaggtaa |
55 |
Q |
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| T |
37451701 |
agcagcttttgaagtaattgaagaaaacaaggtaa |
37451735 |
T |
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