View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7975_low_3 (Length: 613)
Name: NF7975_low_3
Description: NF7975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7975_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 490; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 15 - 594
Target Start/End: Original strand, 21716348 - 21716928
Alignment:
| Q |
15 |
aatatattcagaaactttagcaacagttgtgataacaatatctgccatgaactcaaaggcaaccctaacaatagaatcatgtgcatagttagtcaaatat |
114 |
Q |
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| T |
21716348 |
aatatattcagaaactttagcaacagttgtgataacaatatctgccatgaactcaaaggcaaccctaacaatagaatcatgtgcatagttagtcaaatat |
21716447 |
T |
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| Q |
115 |
ttacctcgagcatagttatgtaattagttgttggatcatnnnnnnnnnnnnnnnnnntagagtttgtcatacttgcaatggaattgaatannnnnnnggt |
214 |
Q |
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| T |
21716448 |
ttacctcgagcatagttatgtaattagttgttggatcataaaaaaaataaaaataaatagagtttgtcatacttgcaatggaattgaatatttttttggt |
21716547 |
T |
|
| Q |
215 |
gttaaccctcttattctcaggcgaaaggtcccttgataatccgaagtaagtaaagtctggcaaagaattgttccagcttaggaaaatacaatttaatata |
314 |
Q |
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| T |
21716548 |
gttaaccctcttattctcaggcgaaaggtcccttgataatccgaagtaagtaaagtctggcaaagaattgttccagcttaggaaaatacaatttaatata |
21716647 |
T |
|
| Q |
315 |
aataaacttttatattaaaggaaacatgctatacaaaactcaaactttaatcacgcctagaatcctaatgttacagaataatgaacttatttatgtatgc |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21716648 |
aataaacttttatattaaaggaaacatgctatacaaaactcaaactttaatcaagcctagaatcctaatgttacagaataatgaacttatttatgtatgc |
21716747 |
T |
|
| Q |
415 |
aaaagaaagaacatttaatagctaaaacatccaattcagagcaagaaaccagttttaccattgatatattcagagcgtgcatgaaagcaccatacctgat |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21716748 |
aaaagaaagaacatttaatagctaaaacatccaattcagagcaagaaaccagttttaccattgatatattcagagcgtgcatgaaagcaccatacctgat |
21716847 |
T |
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| Q |
515 |
ctaggagtggatttctgtggcaggagatgacttgttagcttatcacagctgggtgttacagatg-caaagagaagactttg |
594 |
Q |
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| T |
21716848 |
ctaggagtggatttctgtggcaggagatgacttgttagcttatcacagctgggtgttacagatgccagagagaagactttg |
21716928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 21703147 - 21703051
Alignment:
| Q |
20 |
attcagaaactttagcaacagttgtgataacaatatctgccatgaactcaaaggcaaccctaacaatagaatcatgtgcatagttagtcaaatattta |
117 |
Q |
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|||||| || |||||||||| | | |||||| | |||||||| || | ||||| || |||||||||| ||||||||||||||||||||||||||||| |
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| T |
21703147 |
attcagcaagtttagcaacaatggagataacgttttctgccatcaaattaaagg-aagcctaacaatacaatcatgtgcatagttagtcaaatattta |
21703051 |
T |
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