View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7975_low_5 (Length: 546)

Name: NF7975_low_5
Description: NF7975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7975_low_5
NF7975_low_5
[»] chr7 (9 HSPs)
chr7 (18-395)||(24905486-24905863)
chr7 (475-535)||(24905943-24906003)
chr7 (125-297)||(35515524-35515696)
chr7 (30-281)||(9627617-9627868)
chr7 (204-277)||(10065098-10065171)
chr7 (18-89)||(35515738-35515809)
chr7 (206-277)||(29375311-29375382)
chr7 (211-281)||(10274897-10274967)
chr7 (210-299)||(38342363-38342452)
[»] chr2 (4 HSPs)
chr2 (18-380)||(12606179-12606541)
chr2 (18-182)||(29690630-29690794)
chr2 (227-279)||(2168120-2168172)
chr2 (206-279)||(27008666-27008739)
[»] chr1 (7 HSPs)
chr1 (18-378)||(42785153-42785513)
chr1 (142-378)||(23451450-23451686)
chr1 (208-269)||(17127913-17127974)
chr1 (204-277)||(42475736-42475809)
chr1 (18-89)||(33136530-33136601)
chr1 (208-281)||(25392928-25393001)
chr1 (208-281)||(25529526-25529599)
[»] chr4 (7 HSPs)
chr4 (191-384)||(32807981-32808173)
chr4 (30-281)||(13609378-13609629)
chr4 (22-129)||(32807855-32807962)
chr4 (169-323)||(13156811-13156965)
chr4 (22-70)||(29522081-29522129)
chr4 (210-251)||(40155389-40155430)
chr4 (18-74)||(30972780-30972836)
[»] chr3 (8 HSPs)
chr3 (18-284)||(23049530-23049795)
chr3 (20-296)||(25408170-25408446)
chr3 (18-93)||(20017841-20017916)
chr3 (18-89)||(29542806-29542877)
chr3 (328-378)||(23049460-23049510)
chr3 (206-280)||(25845134-25845208)
chr3 (19-93)||(42806709-42806783)
chr3 (205-297)||(6893594-6893686)
[»] chr5 (5 HSPs)
chr5 (30-263)||(22936391-22936624)
chr5 (210-296)||(32251592-32251678)
chr5 (18-71)||(804817-804870)
chr5 (18-93)||(32018403-32018478)
chr5 (18-51)||(32246544-32246577)
[»] chr8 (2 HSPs)
chr8 (203-278)||(29287489-29287564)
chr8 (205-284)||(43775667-43775746)
[»] chr6 (4 HSPs)
chr6 (211-281)||(17293342-17293412)
chr6 (206-279)||(29599753-29599826)
chr6 (18-70)||(29321743-29321795)
chr6 (206-269)||(10943610-10943673)


Alignment Details
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 395
Target Start/End: Original strand, 24905486 - 24905863
Alignment:
Q  18 cttagtaggcaacctatcacgtaacagacgccaaacaaataacaccaccttcaaaggaatttccttctgccacaaataatgcacagacaccgcatcatca 117  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  24905486 cttagtaggcaacctatcatgtaacagacgccaaacaaataacaccaccttcaaaggaatttccttctgccacaaataatgcagagacaccgcatcatca 24905585  T
Q  118 ataggaccattaacatacaagaagttataagcacttcggacagtataaacggatgatgtttccaaccgccaaagccttctgtcgaccctatcaacctgca 217  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24905586 ataggaccattaacagacaagaagttataagcacttcggacagtataaacggatgatgtttccaaccgccaaagccttctgtcgaccctatcaacctgca 24905685  T
Q  218 aagtgacactttgaagtaaaagcctaagttcccccactaactcctcttcccacccaaacaacctacgtatccaactccacactgccccctccaaacccca 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  24905686 aagtgacactttgaagtaaaagcctaagttcccccactaactcctcttcccacccaaacaacctacgtctccaactccacgctgccccctccaaacccca 24905785  T
Q  318 ccctaacaaatgcatgccaaaaaccgattcactcttcaacaacgacaactcaaataatctattgaatttaaggggatc 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24905786 ccctaacaaatgcatgccaaaaaccgattcactcttcaacaacgacaactcaaataatctattgaatttaaggggatc 24905863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 475 - 535
Target Start/End: Original strand, 24905943 - 24906003
Alignment:
Q  475 catctatgatacaattaacaataatctcacattccactcttttcgttccttccagtttcat 535  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24905943 catctatgatacaattaacaataatctcacattccactcttttcgttccttccagtttcat 24906003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 125 - 297
Target Start/End: Complemental strand, 35515696 - 35515524
Alignment:
Q  125 cattaacatacaagaagttataagcacttcggacagtataaacggatgatgtttccaaccgccaaagccttctgtcgaccctatcaacctgcaaagtgac 224  Q
    ||||||||| ||| || |||||||||||||| || ||||| || || ||||| |||||   ||| ||||| || ||||  ||||||||||||||| | ||    
T  35515696 cattaacattcaaaaaattataagcacttcgaactgtatacactgaagatgtgtccaatttccacagcctcctatcgatgctatcaacctgcaaattaac 35515597  T
Q  225 actttgaagtaaaagcctaagttcccccactaactcctcttcccacccaaacaacctacgtatccaactccac 297  Q
    | ||||||||| ||||||||| ||||||||||||| |||||||||| ||||||||| |||  |||| ||||||    
T  35515596 attttgaagtagaagcctaagatcccccactaacttctcttcccacgcaaacaacccacgcctccacctccac 35515524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 30 - 281
Target Start/End: Complemental strand, 9627868 - 9627617
Alignment:
Q  30 cctatcacgtaacagacgccaaacaaataacaccaccttcaaaggaatttccttctgccacaaataatgcacagacaccgcatcatcaataggaccatta 129  Q
    ||||||||| |||||||||||| |||| |  ||||||||||||||||  | ||| ||||||||| |   ||  | ||| || | |||||||  | |||||    
T  9627868 cctatcacgaaacagacgccaagcaaaaattaccaccttcaaaggaacgttcttgtgccacaaagaggacatgggcactgcttgatcaataacaacatta 9627769  T
Q  130 acatacaagaagttataagcacttcggacagtataaacggatgatgtttccaaccgccaaagccttctgtcgaccctatcaacctgcaaagtgacacttt 229  Q
     ||| ||| || |||||||||| ||  |  |||||||| || ||||||| ||||| ||| || || || || || ||||||||||||||||||  | |||    
T  9627768 gcattcaaaaatttataagcacatcaaattgtataaacagaagatgttttcaacctccacagtctcctatcaactctatcaacctgcaaagtggtatttt 9627669  T
Q  230 gaagtaaaagcctaagttcccccactaactcctcttcccacccaaacaacct 281  Q
    ||||||||||||||||||||| |||||||||||| |||||| |||| |||||    
T  9627668 gaagtaaaagcctaagttccctcactaactcctcctcccacgcaaataacct 9627617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 204 - 277
Target Start/End: Original strand, 10065098 - 10065171
Alignment:
Q  204 cctatcaacctgcaaagtgacactttgaagtaaaagcctaagttcccccactaactcctcttcccacccaaaca 277  Q
    |||||| ||||||||||| ||| |  |||| ||| |||||||||||||||||||||||||||||||| ||||||    
T  10065098 cctatccacctgcaaagttacattaagaagcaaatgcctaagttcccccactaactcctcttcccacgcaaaca 10065171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 35515809 - 35515738
Alignment:
Q  18 cttagtaggcaacctatcacgtaacagacgccaaacaaataacaccaccttcaaaggaatttccttctgcca 89  Q
    ||||||||| | |||||| || ||||  ||||||||||||| |||||||||||||||||| ||||| |||||    
T  35515809 cttagtaggaagcctatcccgaaacaagcgccaaacaaatagcaccaccttcaaaggaatgtccttatgcca 35515738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 277
Target Start/End: Original strand, 29375311 - 29375382
Alignment:
Q  206 tatcaacctgcaaagtgacactttgaagtaaaagcctaagttcccccactaactcctcttcccacccaaaca 277  Q
    |||||||||||||||  || || |||||||| |   ||||||||||||| ||||||||||||||| ||||||    
T  29375311 tatcaacctgcaaagccaccctgtgaagtaataaaataagttcccccaccaactcctcttcccacacaaaca 29375382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 211 - 281
Target Start/End: Complemental strand, 10274967 - 10274897
Alignment:
Q  211 acctgcaaagtgacactttgaagtaaaagcctaagttcccccactaactcctcttcccacccaaacaacct 281  Q
    |||| |||||| ||| |||| ||||| | ||||||||||||||| | |||||| |||||| ||||||||||    
T  10274967 acctccaaagtcacagtttggagtaataacctaagttcccccaccacctcctcctcccacgcaaacaacct 10274897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 299
Target Start/End: Complemental strand, 38342452 - 38342363
Alignment:
Q  210 aacctgcaaagtgacactttgaagtaaaagcctaagttcccccactaactcctcttcccacccaaacaacctacgtatccaactccacac 299  Q
    |||||| ||||  ||| ||||||||||||||||||| ||| | ||  ||||||| |||||| |||||| ||||||  |||| ||||||||    
T  38342452 aacctgtaaagaaacattttgaagtaaaagcctaagctccgctaccgactcctcctcccacgcaaacagcctacgcctccacctccacac 38342363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 163; Significance: 8e-87; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 18 - 380
Target Start/End: Complemental strand, 12606541 - 12606179
Alignment:
Q  18 cttagtaggcaacctatcacgtaacagacgccaaacaaataacaccaccttcaaaggaatttccttctgccacaaataatgcacagacaccgcatcatca 117  Q
    |||||||| |||||||||||| | ||  ||||||  |||||| || |||||||| |||| ||||||| ||||||||||| || | |||||||| ||||||    
T  12606541 cttagtagacaacctatcacgaagcaaccgccaagaaaataaaacaaccttcaatggaacttccttcagccacaaataaggctctgacaccgcctcatca 12606442  T
Q  118 ataggaccattaacatacaagaagttataagcacttcggacagtataaacggatgatgtttccaaccgccaaagccttctgtcgaccctatcaacctgca 217  Q
      |||| ||||| || |||| || ||||||||||| || ||||||||||| || |||||||| |||||||| | |||| |||| ||||| ||||||||||    
T  12606441 gcaggagcattatcagacaacaatttataagcactacgaacagtataaacagaagatgtttctaaccgccataaccttttgtcaaccctgtcaacctgca 12606342  T
Q  218 aagtgacactttgaagtaaaagcctaagttcccccactaactcctcttcccacccaaacaacctacgtatccaactccacactgccccctccaaacccca 317  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||| | ||||||  ||||||||||| | |||||||| |  |||||    
T  12606341 aagtgacactttgaagtaaaagcctaagatcccccactaactcctcttctcacgcaaaaagcctacgcctccaactccacgccgccccctcgacccccca 12606242  T
Q  318 ccctaacaaatgcatgccaaaaaccgattcactcttcaacaacgacaactcaaataatctatt 380  Q
    |||||||  |||||| |||||||||||||| | ||||||||||||||||||||||||||||||    
T  12606241 ccctaactcatgcataccaaaaaccgattctcccttcaacaacgacaactcaaataatctatt 12606179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 29690794 - 29690630
Alignment:
Q  18 cttagtaggcaacctatcacgtaacagacgccaaacaaataacaccaccttcaaaggaatttccttctgccacaaataatgcacagacaccgcatcatca 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||| ||||||||||||||||| ||||||||||||||    
T  29690794 cttagtaggcaacctatcacgtaacagacgccaaacaaataacaccacctacaaagaaacttccttcagccacaaataatgcacatacaccgcatcatca 29690695  T
Q  118 ataggaccattaacatacaagaagttataagcacttcggacagtataaacggatgatgtttccaa 182  Q
    ||||| ||||||| | |||||||||||||||||||||| |||||||||||||||||||| |||||    
T  29690694 atagggccattaatagacaagaagttataagcacttcgaacagtataaacggatgatgtatccaa 29690630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 279
Target Start/End: Original strand, 2168120 - 2168172
Alignment:
Q  227 tttgaagtaaaagcctaagttcccccactaactcctcttcccacccaaacaac 279  Q
    |||||||||| |  |||||||||||||| ||||||||||||||| ||||||||    
T  2168120 tttgaagtaatattctaagttcccccaccaactcctcttcccacgcaaacaac 2168172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 27008739 - 27008666
Alignment:
Q  206 tatcaacctgcaaagtgacactttgaagtaaaagcctaagttcccccactaactcctcttcccacccaaacaac 279  Q
    |||||||||||||||| ||| | |||||||  |   ||||||||||||| |||||||| |||||| ||||||||    
T  27008739 tatcaacctgcaaagtcacattatgaagtagtaatataagttcccccaccaactcctcctcccacgcaaacaac 27008666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 126; Significance: 1e-64; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 18 - 378
Target Start/End: Complemental strand, 42785513 - 42785153
Alignment:
Q  18 cttagtaggcaacctatcacgtaacagacgccaaacaaataacaccaccttcaaaggaatttccttctgccacaaataatgcacagacaccgcatcatca 117  Q
    ||||||| ||||||||||||||||||| |||||| ||||||||| ||||||||| |||| ||||||  | ||||| | || |||| ||||| || ||||     
T  42785513 cttagtacgcaacctatcacgtaacaggcgccaagcaaataacatcaccttcaagggaacttccttgagacacaagttatacacatacacctcagcatcg 42785414  T
Q  118 ataggaccattaacatacaagaagttataagcacttcggacagtataaacggatgatgtttccaaccgccaaagccttctgtcgaccctatcaacctgca 217  Q
    | |  | ||||||||  ||| || ||||| |||||||  |||||||||||  | ||||||||||| |||||||||||||| |||||| | || || ||||    
T  42785413 acactagcattaacagtcaaaaatttatatgcacttcaaacagtataaacaaaagatgtttccaatcgccaaagccttctatcgaccttgtccacttgca 42785314  T
Q  218 aagtgacactttgaagtaaaagcctaagttcccccactaactcctcttcccacccaaacaacctacgtatccaactccacactgccccctccaaacccca 317  Q
    |||||||||||||||||||||||||||||||| | ||||| ||||||||||||  ||||||||||||  |||||||||||   ||||||||| | |||||    
T  42785313 aagtgacactttgaagtaaaagcctaagttcctctactaattcctcttcccacgaaaacaacctacgcctccaactccacgtcgccccctcc-accccca 42785215  T
Q  318 ccctaacaaatgcatgccaaaaaccga-ttcactcttcaacaacgacaactcaaataatcta 378  Q
     ||||||||||||||| |||| |||||   ||||||||| || |||||||||| ||||||||    
T  42785214 tcctaacaaatgcatgtcaaacaccgacaccactcttcaccaccgacaactcatataatcta 42785153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 142 - 378
Target Start/End: Complemental strand, 23451686 - 23451450
Alignment:
Q  142 ttataagcacttcggacagtataaacggatgatgtttccaaccgccaaagccttctgtcgaccctatcaacctgcaaagtgacactttgaagtaaaagcc 241  Q
    ||||||||||| || || || || ||||| |||||||| || ||||| | |||||| || ||||||||||||||||||| |||| |  | ||| ||||||    
T  23451686 ttataagcactgcgaactgtgtacacggaagatgtttctaatcgccacaaccttctatcaaccctatcaacctgcaaagagacattaaggagtcaaagcc 23451587  T
Q  242 taagttcccccactaactcctcttcccacccaaacaacctacgtatccaactccacactgccccctccaaaccccaccctaacaaatgcatgccaaaaac 341  Q
    |||  ||||| ||   |||||| |||||| |||||||||| ||| |||| |||||  || |||||||||  ||||||| || |||||||||  |||| ||    
T  23451586 taatatcccctacctcctcctcctcccacacaaacaacctgcgtctccacctccaagctaccccctccatcccccaccatagcaaatgcatatcaaacac 23451487  T
Q  342 cgattcactcttcaacaacgacaactcaaataatcta 378  Q
     ||| ||  ||||||||| ||||| ||||||||||||    
T  23451486 tgatgcatccttcaacaaagacaattcaaataatcta 23451450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 208 - 269
Target Start/End: Complemental strand, 17127974 - 17127913
Alignment:
Q  208 tcaacctgcaaagtgacactttgaagtaaaagcctaagttcccccactaactcctcttccca 269  Q
    |||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||    
T  17127974 tcaacctgcaaagaaacattttgaagtaaaagcctaagttcccccactaactcctcttccca 17127913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 204 - 277
Target Start/End: Complemental strand, 42475809 - 42475736
Alignment:
Q  204 cctatcaacctgcaaagtgacactttgaagtaaaagcctaagttcccccactaactcctcttcccacccaaaca 277  Q
    |||||| ||||||||||| ||| |  |||| ||| | |||||||||||||||||||||||||||||| ||||||    
T  42475809 cctatccacctgcaaagttacattaagaagcaaatgtctaagttcccccactaactcctcttcccacacaaaca 42475736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 33136530 - 33136601
Alignment:
Q  18 cttagtaggcaacctatcacgtaacagacgccaaacaaataacaccaccttcaaaggaatttccttctgcca 89  Q
    |||||||||||||| |||||| |||||||||||| |||| |  || |||||||| ||||| ||||| |||||    
T  33136530 cttagtaggcaaccaatcacggaacagacgccaagcaaagagaacaaccttcaatggaatatccttatgcca 33136601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 281
Target Start/End: Original strand, 25392928 - 25393001
Alignment:
Q  208 tcaacctgcaaagtgacactttgaagtaaaagcctaagttcccccactaactcctcttcccacccaaacaacct 281  Q
    |||||||||||||| ||| | ||||| |  | ||||||||||||||| |||||||| |||||  ||||||||||    
T  25392928 tcaacctgcaaagtcacattatgaagaagtaacctaagttcccccaccaactcctcctcccatgcaaacaacct 25393001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 281
Target Start/End: Complemental strand, 25529599 - 25529526
Alignment:
Q  208 tcaacctgcaaagtgacactttgaagtaaaagcctaagttcccccactaactcctcttcccacccaaacaacct 281  Q
    ||||||| |||| | ||| |||||||||||||  |||| |||||| |||||||||| |||||  ||||||||||    
T  25529599 tcaacctacaaatttacattttgaagtaaaagtgtaagctcccccgctaactcctcctcccatgcaaacaacct 25529526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 191 - 384
Target Start/End: Original strand, 32807981 - 32808173
Alignment:
Q  191 gccttctgtcgaccctatcaacctgcaaagtgacactttgaagtaaaagcctaagttcccccactaactcctcttcccacccaaacaacctacgtatcca 290  Q
    ||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||| ||| ||||||||| |||||||||||||  ||||    
T  32807981 gccttctatcgaccctgtcaacctgcaaagtgacactttgaactaaaagcctaagttctcccactagctcttcttcccacgcaaacaacctacgcctcca 32808080  T
Q  291 actccacactgccccctccaaaccccaccctaacaaatgcatgccaaaaaccgattcactcttcaacaacgacaactcaaataatctattgaat 384  Q
    ||||||| | ||||||||| | ||||| ||||||||||||||| | || |||||  ||||||||||||  ||||||||| ||||||||||||||    
T  32808081 actccacgccgccccctcc-acccccatcctaacaaatgcatgtcgaacaccgacacactcttcaacattgacaactcatataatctattgaat 32808173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 30 - 281
Target Start/End: Original strand, 13609378 - 13609629
Alignment:
Q  30 cctatcacgtaacagacgccaaacaaataacaccaccttcaaaggaatttccttctgccacaaataatgcacagacaccgcatcatcaataggaccatta 129  Q
    ||||||||| |||||||||||| |||| |  ||||||||||||||||  | ||| ||||||||| |   ||  | ||| || | |||||||  | |||||    
T  13609378 cctatcacgaaacagacgccaagcaaaaattaccaccttcaaaggaacgttcttgtgccacaaagaggacatgggcactgcttgatcaataacaacatta 13609477  T
Q  130 acatacaagaagttataagcacttcggacagtataaacggatgatgtttccaaccgccaaagccttctgtcgaccctatcaacctgcaaagtgacacttt 229  Q
     ||| ||| || |||||||||| ||  |  |||||||| || ||||||| ||||| ||| || || || || || ||||||||||||||||||  | |||    
T  13609478 gcattcaaaaatttataagcacatcaaattgtataaacagaagatgttttcaacctccacagtctcctatcaactctatcaacctgcaaagtggtatttt 13609577  T
Q  230 gaagtaaaagcctaagttcccccactaactcctcttcccacccaaacaacct 281  Q
    ||||||||||||||||||||| |||||||||||| |||||| |||| |||||    
T  13609578 gaagtaaaagcctaagttccctcactaactcctcctcccacgcaaataacct 13609629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 32807855 - 32807962
Alignment:
Q  22 gtaggcaacctatcacgtaacagacgccaaacaaataacaccaccttcaaaggaatttccttctgccacaaataatgcacagacaccgcatcatcaatag 121  Q
    ||||||||||||||| ||||||  |||||||||||||||||||||||||| |||| ||||||  ||||||||| | ||||| ||||| || |||||| ||    
T  32807855 gtaggcaacctatcaagtaacatgcgccaaacaaataacaccaccttcaagggaacttccttaagccacaaatgaggcacatacacctcaacatcaacag 32807954  T
Q  122 gaccatta 129  Q
    || |||||    
T  32807955 gagcatta 32807962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 169 - 323
Target Start/End: Complemental strand, 13156965 - 13156811
Alignment:
Q  169 gatgatgtttccaaccgccaaagccttctgtcgaccctatcaacctgcaaagtgacactttgaagtaaaagcctaagttcccccactaactcctcttccc 268  Q
    ||||| || |||| |||||||| || ||| |||||||| || ||||||||||| ||| |  ||||||||||| ||||| ||||||| |||||||| ||||    
T  13156965 gatgaagtatccagccgccaaatccatctatcgaccctgtctacctgcaaagtaacattcagaagtaaaagcataagtgcccccaccaactcctcctccc 13156866  T
Q  269 acccaaacaacctacgtatccaactccacactgccccctccaaaccccaccctaa 323  Q
    |  | |||||||||||  ||||||||||||| || || ||||  |||||||||||    
T  13156865 aggcgaacaacctacgcctccaactccacaccgctccatccactccccaccctaa 13156811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 29522081 - 29522129
Alignment:
Q  22 gtaggcaacctatcacgtaacagacgccaaacaaataacaccaccttca 70  Q
    ||||||||||||||||| ||||||| ||||||||| ||||| |||||||    
T  29522081 gtaggcaacctatcacgaaacagacaccaaacaaaaaacacaaccttca 29522129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 40155389 - 40155430
Alignment:
Q  210 aacctgcaaagtgacactttgaagtaaaagcctaagttcccc 251  Q
    |||||||||||| ||| ||||||||||||||||||| |||||    
T  40155389 aacctgcaaagtaacattttgaagtaaaagcctaagatcccc 40155430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 30972780 - 30972836
Alignment:
Q  18 cttagtaggcaacctatcacgtaacagacgccaaacaaataacaccaccttcaaagg 74  Q
    |||||| |||||||||||||| |||| ||||||| |||| || || |||||||||||    
T  30972780 cttagttggcaacctatcacgaaacatacgccaagcaaacaaaacgaccttcaaagg 30972836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 23049795 - 23049530
Alignment:
Q  18 cttagtaggcaacctatcacgtaacagacgccaaacaaataacaccaccttcaaaggaatttccttctgccacaaataatgcacagacaccgcatcatca 117  Q
    ||||||||| | |||||| || |||| || |||| ||||||||||||||||||||||||| ||||| ||||| | | ||  ||||  |||||||   |||    
T  23049795 cttagtaggaagcctatcccgaaacaaactccaagcaaataacaccaccttcaaaggaatgtccttatgccaaagagaagccacatgcaccgcaatgtca 23049696  T
Q  118 ataggaccattaacatacaagaagttataagcacttcggacagtataaacggatgatgtttccaaccgccaaagccttctgtcgaccctatcaacctgca 217  Q
    | || | ||||||||| ||| || |||||||||||||| || |||||||| |  |||||||||| || ||| ||||| || | || |||||||||||| |    
T  23049695 acagtaacattaacat-caaaaaattataagcacttcgaactgtataaactggagatgtttccagcctccacagcctcctattgatcctatcaacctgta 23049597  T
Q  218 aagtgacactttgaagtaaaagcctaagttcccccactaactcctcttcccacccaaacaacctacg 284  Q
    || | ||| ||||||||| ||||||||||||||||||||| |||||||||||   ||||||||||||    
T  23049596 aattaacattttgaagtagaagcctaagttcccccactaattcctcttcccaagaaaacaacctacg 23049530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 296
Target Start/End: Complemental strand, 25408446 - 25408170
Alignment:
Q  20 tagtaggcaacctatcacgtaacagacgccaaacaaataacaccaccttcaaaggaatttccttctgccacaaataatgcacagacaccgcatcatcaat 119  Q
    ||||||| | ||||||||| |||||||||||| |||| || || |||||||||||||  ||||| ||||| | | ||  || || |||| ||| ||||||    
T  25408446 tagtaggtagcctatcacgaaacagacgccaagcaaacaatacaaccttcaaaggaacatccttatgccagagagaagacataggcaccacatgatcaat 25408347  T
Q  120 aggaccattaacatacaagaagttataagcacttcggacagtataaacggatgatgtttccaaccgccaaagccttctgtcgaccctatcaacctgcaaa 219  Q
    | ||   | ||||| |||  | ||||||||||| || ||| |||||||||| ||||  |||||   |||||||| | | ||  || | ||||||||||||    
T  25408346 acgagactgaacattcaaacaattataagcactacgaacaatataaacggaagatgactccaatatccaaagccatttatcttccatgtcaacctgcaaa 25408247  T
Q  220 gtgacactttgaagtaaaagcctaagttcccccactaactcctcttcccacccaaacaacctacgtatccaactcca 296  Q
    || ||| ||| |||||| |||||||| |||||||| ||||||||||||||  |||| ||||||||  ||||||||||    
T  25408246 gtaacattttaaagtaatagcctaagatcccccaccaactcctcttcccatgcaaataacctacgcctccaactcca 25408170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 20017841 - 20017916
Alignment:
Q  18 cttagtaggcaacctatcacgtaacagacgccaaacaaataacaccaccttcaaaggaatttccttctgccacaaa 93  Q
    ||||||||||||||||||||| ||||| |||||| |||| | ||| |||||||||||||  || || |||||||||    
T  20017841 cttagtaggcaacctatcacggaacagccgccaaccaaagagcacaaccttcaaaggaacatctttatgccacaaa 20017916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 29542806 - 29542877
Alignment:
Q  18 cttagtaggcaacctatcacgtaacagacgccaaacaaataacaccaccttcaaaggaatttccttctgcca 89  Q
    |||||||||||||| |||||| |||| |||||| ||||| |||||||||||||| ||||  ||||| |||||    
T  29542806 cttagtaggcaaccgatcacgaaacatacgccacacaaacaacaccaccttcaatggaacgtccttgtgcca 29542877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 328 - 378
Target Start/End: Complemental strand, 23049510 - 23049460
Alignment:
Q  328 tgcatgccaaaaaccgattcactcttcaacaacgacaactcaaataatcta 378  Q
    ||||| ||||| || ||||||| ||||||||| ||||||||||||||||||    
T  23049510 tgcataccaaacacagattcacccttcaacaaagacaactcaaataatcta 23049460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 25845208 - 25845134
Alignment:
Q  206 tatcaacctgcaaagtgacactttgaagtaaaagcctaagttcccccactaactcctcttcccacccaaacaacc 280  Q
    |||||||||||||||||||| | |||||||| |  ||||||||  |||| |||||||| |||||  |||||||||    
T  25845208 tatcaacctgcaaagtgacattatgaagtaataatctaagttcgtccaccaactcctcctcccaagcaaacaacc 25845134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 42806709 - 42806783
Alignment:
Q  19 ttagtaggcaacctatcacgtaacagacgccaaacaaataacaccaccttcaaaggaatttccttctgccacaaa 93  Q
    ||||||||||||| |||||| |||| |||||| ||||| ||||| |||||||| || |  ||||| |||||||||    
T  42806709 ttagtaggcaaccgatcacgaaacatacgccatacaaacaacacaaccttcaaggggacatccttgtgccacaaa 42806783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 205 - 297
Target Start/End: Complemental strand, 6893686 - 6893594
Alignment:
Q  205 ctatcaacctgcaaagtgacactttgaagtaaaagcctaagttcccccactaactcctcttcccacccaaacaacctacgtatccaactccac 297  Q
    |||| |||||| ||||| ||| ||||||||||||   |||| ||  ||||  ||||||| |||||| |||||||||||||| |||| ||||||    
T  6893686 ctatgaacctgtaaagtcacattttgaagtaaaataataagctcttccaccgactcctcctcccacacaaacaacctacgtctccacctccac 6893594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 30 - 263
Target Start/End: Complemental strand, 22936624 - 22936391
Alignment:
Q  30 cctatcacgtaacagacgccaaacaaataacaccaccttcaaaggaatttccttctgccacaaataatgcacagacaccgcatcatcaataggaccatta 129  Q
    ||||||| | |||||||||||  |||| | |||||||||||||||||  | ||| ||||||||| ||  ||| | |||||| | ||||| || | |||||    
T  22936624 cctatcatgaaacagacgccaggcaaaaatcaccaccttcaaaggaacgttcttgtgccacaaagaagacacgggcaccgcttgatcaacagcaacatta 22936525  T
Q  130 acatacaagaagttataagcacttcggacagtataaacggatgatgtttccaaccgccaaagccttctgtcgaccctatcaacctgcaaagtgacacttt 229  Q
     ||| ||| || |||||||||||||| |  ||||||||  | |||||||| |||| ||| |  ||  | || || ||||||||||||||||||||| |||    
T  22936524 gcattcaaaaatttataagcacttcgaattgtataaacataagatgtttctaacctccacaatctcatatcaactctatcaacctgcaaagtgacatttt 22936425  T
Q  230 gaagtaaaagcctaagttcccccactaactcctc 263  Q
    |||||| ||  |||||||||||||||||||||||    
T  22936424 gaagtataattctaagttcccccactaactcctc 22936391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 210 - 296
Target Start/End: Complemental strand, 32251678 - 32251592
Alignment:
Q  210 aacctgcaaagtgacactttgaagtaaaagcctaagttcccccactaactcctcttcccacccaaacaacctacgtatccaactcca 296  Q
    |||||||||||| ||| | | ||||||| ||||||||||||| || |||||||| |||||| |||||| ||||||| ||||| ||||    
T  32251678 aacctgcaaagttacattgtcaagtaaaggcctaagttcccctaccaactcctcctcccacgcaaacagcctacgtctccaattcca 32251592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 804817 - 804870
Alignment:
Q  18 cttagtaggcaacctatcacgtaacagacgccaaacaaataacaccaccttcaa 71  Q
    ||||||| ||| ||||||||||||||| |||||| |||||| ||||||||||||    
T  804817 cttagtaagcagcctatcacgtaacagtcgccaagcaaatagcaccaccttcaa 804870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 32018403 - 32018478
Alignment:
Q  18 cttagtaggcaacctatcacgtaacagacgccaaacaaataacaccaccttcaaaggaatttccttctgccacaaa 93  Q
    |||||| ||||||| |||||| |  ||||||||  |||||| |||||||||||| |||| |||||| |||||||||    
T  32018403 cttagtcggcaaccgatcacgaaggagacgccacgcaaatagcaccaccttcaagggaacttccttgtgccacaaa 32018478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 32246577 - 32246544
Alignment:
Q  18 cttagtaggcaacctatcacgtaacagacgccaa 51  Q
    ||||||||||||||||||||||||||| ||||||    
T  32246577 cttagtaggcaacctatcacgtaacaggcgccaa 32246544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 203 - 278
Target Start/End: Original strand, 29287489 - 29287564
Alignment:
Q  203 ccctatcaacctgcaaagtgacactttgaagtaaaagcctaagttcccccactaactcctcttcccacccaaacaa 278  Q
    |||| |||||||||||||| ||| | |||||||| | ||||||||||||||| ||||||||||||||| |||||||    
T  29287489 ccctgtcaacctgcaaagtaacattatgaagtaacatcctaagttcccccaccaactcctcttcccacacaaacaa 29287564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 205 - 284
Target Start/End: Complemental strand, 43775746 - 43775667
Alignment:
Q  205 ctatcaacctgcaaagtgacactttgaagtaaaagcctaagttcccccactaactcctcttcccacccaaacaacctacg 284  Q
    |||||||||||||| || ||| |   ||||||||||||||||| ||| | |||||| ||||||||| |||||||||||||    
T  43775746 ctatcaacctgcaacgtaacattaataagtaaaagcctaagtttccctaataactcttcttcccacgcaaacaacctacg 43775667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 211 - 281
Target Start/End: Original strand, 17293342 - 17293412
Alignment:
Q  211 acctgcaaagtgacactttgaagtaaaagcctaagttcccccactaactcctcttcccacccaaacaacct 281  Q
    ||||||||||| ||| |||||||||| | ||||||||||||||| ||||| ||||||||| ||||||||||    
T  17293342 acctgcaaagtcacattttgaagtaataacctaagttcccccaccaactcttcttcccacgcaaacaacct 17293412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 29599753 - 29599826
Alignment:
Q  206 tatcaacctgcaaagtgacactttgaagtaaaagcctaagttcccccactaactcctcttcccacccaaacaac 279  Q
    |||||||||||||| ||||| |||||||||| | |||||| |||||||| |||||   ||||||| ||||||||    
T  29599753 tatcaacctgcaaaatgacattttgaagtaacaacctaagctcccccaccaactctcgttcccacacaaacaac 29599826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 29321743 - 29321795
Alignment:
Q  18 cttagtaggcaacctatcacgtaacagacgccaaacaaataacaccaccttca 70  Q
    |||||||||||||| |||||| |||| |||||| ||||| |||||||||||||    
T  29321743 cttagtaggcaaccgatcacgaaacatacgccacacaaacaacaccaccttca 29321795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 269
Target Start/End: Complemental strand, 10943673 - 10943610
Alignment:
Q  206 tatcaacctgcaaagtgacactttgaagtaaaagcctaagttcccccactaactcctcttccca 269  Q
    ||||||| |||||||||||| |||||||||| |   |||||||||||||||||| ||| |||||    
T  10943673 tatcaacatgcaaagtgacattttgaagtaataatataagttcccccactaactactcctccca 10943610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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