View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7975_low_8 (Length: 396)

Name: NF7975_low_8
Description: NF7975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7975_low_8
NF7975_low_8
[»] chr1 (6 HSPs)
chr1 (18-395)||(11329370-11329747)
chr1 (18-395)||(11487391-11487768)
chr1 (130-243)||(37376564-37376677)
chr1 (50-125)||(37376384-37376459)
chr1 (239-286)||(37377410-37377457)
chr1 (288-339)||(37377569-37377620)


Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 395
Target Start/End: Original strand, 11329370 - 11329747
Alignment:
Q  18 acatcattgaacttatcgtcatatatgctgctagttttctttttcgcagctttataagcatcatcccgttgtttttgttctccgattcccacattctcaa 117  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||    
T  11329370 acatcattggacttatcgtcatatatgctgctagttttctttttcgcagctttataagtatcatcccgtcgtttttgttctcctattcccacattctcaa 11329469  T
Q  118 gcatatcagcgtcttcattaatatcaccatcaacaaaaataggctgatctctgtgagtcagaactacagaaccaccttccacaactttgtcaaggccatt 217  Q
    |||||||||||||||| |||||||||||||||||||  |||||||||||||||  |||||||||||||| |||| ||| | |||||||||||||| |||     
T  11329470 gcatatcagcgtcttctttaatatcaccatcaacaattataggctgatctctgatagtcagaactacagtaccaactttcgcaactttgtcaaggtcatg 11329569  T
Q  218 aagaactttcacccccgccaggtgatgagtcttatcctcgtcgtcacttccctctactgcaatgttgtcttgctcctcataaatctttgaaagatgcaat 317  Q
    || |||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| || ||||||    
T  11329570 aacaactttcagccctgccaggtgatgggtcttatcctcgtcgtcacttccctctactgcgatgttgtcttgctcctcaaaaatctttgagagctgcaat 11329669  T
Q  318 actctttccttttcaaacttacaactcttgttagcccgtgatgagatctcggaagtagcttcaaattgtttcgttgtc 395  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  11329670 actctttccttttcaaacttacgactcttgttagcccatgatgagatctcggaagtagcttcaaattgtttcgttgtc 11329747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 395
Target Start/End: Original strand, 11487391 - 11487768
Alignment:
Q  18 acatcattgaacttatcgtcatatatgctgctagttttctttttcgcagctttataagcatcatcccgttgtttttgttctccgattcccacattctcaa 117  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||    
T  11487391 acatcattggacttatcgtcatatatgctgctagttttctttttcgcagctttataagtatcatcccgtcgtttttgttctcctattcccacattctcaa 11487490  T
Q  118 gcatatcagcgtcttcattaatatcaccatcaacaaaaataggctgatctctgtgagtcagaactacagaaccaccttccacaactttgtcaaggccatt 217  Q
    |||||||||||||||| |||||||||||||||||||  |||||||||||||||  |||||||||||||| |||| ||| | |||||||||||||| |||     
T  11487491 gcatatcagcgtcttctttaatatcaccatcaacaattataggctgatctctgatagtcagaactacagtaccaactttcgcaactttgtcaaggtcatg 11487590  T
Q  218 aagaactttcacccccgccaggtgatgagtcttatcctcgtcgtcacttccctctactgcaatgttgtcttgctcctcataaatctttgaaagatgcaat 317  Q
    || |||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| || ||||||    
T  11487591 aacaactttcagccctgccaggtgatgggtcttatcctcgtcgtcacttccctctactgcgatgttgtcttgctcctcaaaaatctttgagagctgcaat 11487690  T
Q  318 actctttccttttcaaacttacaactcttgttagcccgtgatgagatctcggaagtagcttcaaattgtttcgttgtc 395  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  11487691 actctttccttttcaaacttacgactcttgttagcccatgatgagatctcggaagtagcttcaaattgtttcgttgtc 11487768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 130 - 243
Target Start/End: Original strand, 37376564 - 37376677
Alignment:
Q  130 cttcattaatatcaccatcaacaaaaataggctgatctctgtgagtcagaactacagaaccaccttccacaactttgtcaaggccattaagaactttcac 229  Q
    |||||||||||||||||||| |||  || ||||||||||||  |||||||||||||| |||||||||| |||||||||||||||||| ||||||||| ||    
T  37376564 cttcattaatatcaccatcagcaagtatgggctgatctctgatagtcagaactacagtaccaccttccgcaactttgtcaaggccatgaagaactttgac 37376663  T
Q  230 ccccgccaggtgat 243  Q
    ||||||||||||||    
T  37376664 ccccgccaggtgat 37376677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 50 - 125
Target Start/End: Original strand, 37376384 - 37376459
Alignment:
Q  50 agttttctttttcgcagctttataagcatcatcccgttgtttttgttctccgattcccacattctcaagcatatca 125  Q
    |||||||||||| |||||||||||||||||||||||  ||||||||||||| ||| ||||||| ||||||||||||    
T  37376384 agttttcttttttgcagctttataagcatcatcccgacgtttttgttctccaatttccacattttcaagcatatca 37376459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 239 - 286
Target Start/End: Original strand, 37377410 - 37377457
Alignment:
Q  239 gtgatgagtcttatcctcgtcgtcacttccctctactgcaatgttgtc 286  Q
    |||||| ||| |||||||||||||||||||||| ||||| ||||||||    
T  37377410 gtgatgtgtcgtatcctcgtcgtcacttccctcaactgcgatgttgtc 37377457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 288 - 339
Target Start/End: Original strand, 37377569 - 37377620
Alignment:
Q  288 tgctcctcataaatctttgaaagatgcaatactctttccttttcaaacttac 339  Q
    ||||||||| ||||||| || || |||||||||||||||||||||| |||||    
T  37377569 tgctcctcaaaaatcttcgagagctgcaatactctttccttttcaagcttac 37377620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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