View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7976_high_1 (Length: 788)

Name: NF7976_high_1
Description: NF7976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7976_high_1
NF7976_high_1
[»] chr7 (2 HSPs)
chr7 (1-784)||(36968203-36968971)
chr7 (4-58)||(21723501-21723555)
[»] chr6 (1 HSPs)
chr6 (1-58)||(13379368-13379425)
[»] scaffold0182 (1 HSPs)
scaffold0182 (4-58)||(32137-32191)
[»] chr1 (4 HSPs)
chr1 (496-557)||(36813850-36813911)
chr1 (477-547)||(29861517-29861588)
chr1 (499-543)||(25843204-25843248)
chr1 (502-557)||(42175175-42175230)
[»] chr8 (1 HSPs)
chr8 (495-557)||(24628372-24628434)
[»] chr4 (1 HSPs)
chr4 (497-529)||(2387805-2387837)
[»] chr3 (1 HSPs)
chr3 (496-547)||(34982162-34982213)
[»] chr2 (1 HSPs)
chr2 (497-534)||(37828545-37828582)


Alignment Details
Target: chr7 (Bit Score: 575; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 1 - 784
Target Start/End: Complemental strand, 36968971 - 36968203
Alignment:
Q  1 cgaggtaacgagaacggagaactcgacggccgttactagtttgataatcaacttcgtcaccgttatcaacgacgtcactgttatcatcatcgtcctcgct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  36968971 cgaggtaacgagaacggagaactcgacggccgttactagtttgataatcaacttcgtcaccgttatcaacgacgtcactgttatcatcatcgtcctcgca 36968872  T
Q  101 gctcatattcataatcaattcgcgtttcacgctgatgatgttatcattgtgtgattgagacattgagtttttgttgaatcgatttcgaaagcgttatgga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36968871 gctcatattcataatcaattcgcgtttcacgctgatgatgttatcattgtgtgattgagacattgagtttttgttgaatcgatttcgaaagcgttatgga 36968772  T
Q  201 ggttaaaatcggaaaatgaaatgcaacgatatgcgtgaaaacggaagagagtgtaaaatgaactgagcgaagcagagatatatgaagcggcaaggactca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  36968771 ggttaaaatcggaaaatgaaatgcaacgatatgcgtgaaaacggaagagagtgtaaaatgaactgagagaagcagagatatatgaagcggcaaggactca 36968672  T
Q  301 agtgtctttgtgaaggcgtgcattgtaagttttgaaatgctaaatatatagtgtgggcttttttctttttctgacactcgtttgtggg-nnnnnnnnggg 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||    
T  36968671 agtgtctttgtgaaggcgtgcattgtaagttttgaaatgctaaatatatagtgtgggcttttttctttttctgacactcgtttgtgggcttttttttggg 36968572  T
Q  400 caaacaacagtgggctcttttgggcaactaacagtgggctttccttggtgattgcttaagagacctctttagataattcacgctgcgttatatcct-cgt 498  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||| |||    
T  36968571 caaacaacagtgggctcttttgggcaactaacagtgggctttccttggtgattgctcaagagacctctttagataattcacgttgcgttataacctgcgt 36968472  T
Q  499 gagttaactcacgctgacttaagtcatgtgccgagtatgacttaagtcatgctgagttaagtcacgtagatgtattttagtcggtttgtatggtaataag 598  Q
    |||||||||||||||||||||||||||||||||||||||||               |||||||||| ||||||||||||||| |||||||||||||||||    
T  36968471 gagttaactcacgctgacttaagtcatgtgccgagtatgac---------------ttaagtcacgcagatgtattttagtcagtttgtatggtaataag 36968387  T
Q  599 cgttaatcgttttttgttgggagaagaacaattttcattttccatagaca-tttttgtttgcttaaaggtgttcgaaagttaggttctgattgttgttct 697  Q
    |||||| ||||||||||||||||||||||| |||||||||| |||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  36968386 cgttaagcgttttttgttgggagaagaacagttttcatttttcataaacattttttttttgcttaaaggtgttcgaaagttaggttctgattgttgttct 36968287  T
Q  698 cgtggnnnnnnnnnnnnncctgagaaattaaagatgacttttgagcaaccttcaatttcagttgattctttcatttatattcttcga 784  Q
    ||||                ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||    
T  36968286 cgtgtttcttttttttt---tgagaaattaaagatgacttttgagcaaccttcaatttcagttgattcttttatttattttgttcga 36968203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 21723555 - 21723501
Alignment:
Q  4 ggtaacgagaacggagaactcgacggccgttactagtttgataatcaacttcgtc 58  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  21723555 ggtaacgagaacggagatctcgacggtcgttactagtttgataatcaacttcgtc 21723501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 13379368 - 13379425
Alignment:
Q  1 cgaggtaacgagaacggagaactcgacggccgttactagtttgataatcaacttcgtc 58  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13379368 cgagataacgagaacggagaactcgacggccgttactagtttgataatcaacttcgtc 13379425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 32191 - 32137
Alignment:
Q  4 ggtaacgagaacggagaactcgacggccgttactagtttgataatcaacttcgtc 58  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  32191 ggtaacgagaacggagatctcgacggtcgttactagtttgataatcaacttcgtc 32137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 496 - 557
Target Start/End: Complemental strand, 36813911 - 36813850
Alignment:
Q  496 cgtgagttaactcacgctgacttaagtcatgtgccgagtatgacttaagtcatgctgagtta 557  Q
    ||||| ||||||||||||||||||||||||||||||||  |||||||||||| |||| ||||    
T  36813911 cgtgatttaactcacgctgacttaagtcatgtgccgagcgtgacttaagtcacgctgggtta 36813850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 477 - 547
Target Start/End: Complemental strand, 29861588 - 29861517
Alignment:
Q  477 tcacgctgcgttatatcct-cgtgagttaactcacgctgacttaagtcatgtgccgagtatgacttaagtca 547  Q
    |||||||| |||||| ||| ||||||||||||||||||||||||||||||||||  ||  ||||||||||||    
T  29861588 tcacgctgggttataacctgcgtgagttaactcacgctgacttaagtcatgtgcatagcgtgacttaagtca 29861517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 499 - 543
Target Start/End: Complemental strand, 25843248 - 25843204
Alignment:
Q  499 gagttaactcacgctgacttaagtcatgtgccgagtatgacttaa 543  Q
    ||||||||||||||||||||||||||| |||||||  ||||||||    
T  25843248 gagttaactcacgctgacttaagtcatatgccgagagtgacttaa 25843204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 502 - 557
Target Start/End: Complemental strand, 42175230 - 42175175
Alignment:
Q  502 ttaactcacgctgacttaagtcatgtgccgagtatgacttaagtcatgctgagtta 557  Q
    |||||||||||| ||||||||||| ||||||   |||||||||||| |||||||||    
T  42175230 ttaactcacgctaacttaagtcatatgccgaacgtgacttaagtcacgctgagtta 42175175  T

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Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 495 - 557
Target Start/End: Complemental strand, 24628434 - 24628372
Alignment:
Q  495 tcgtgagttaactcacgctgacttaagtcatgtgccgagtatgacttaagtcatgctgagtta 557  Q
    ||||||||||||||| |||||||||||||||||  |||| ||||||||||||| |||| ||||    
T  24628434 tcgtgagttaactcaagctgacttaagtcatgtatcgagcatgacttaagtcacgctgggtta 24628372  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 497 - 529
Target Start/End: Complemental strand, 2387837 - 2387805
Alignment:
Q  497 gtgagttaactcacgctgacttaagtcatgtgc 529  Q
    |||||||||||||||||||||||||||||||||    
T  2387837 gtgagttaactcacgctgacttaagtcatgtgc 2387805  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 496 - 547
Target Start/End: Complemental strand, 34982213 - 34982162
Alignment:
Q  496 cgtgagttaactcacgctgacttaagtcatgtgccgagtatgacttaagtca 547  Q
    ||||||||||| |||| ||||||||||||||| |||||  ||||||||||||    
T  34982213 cgtgagttaacccacgttgacttaagtcatgtaccgagcgtgacttaagtca 34982162  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 497 - 534
Target Start/End: Complemental strand, 37828582 - 37828545
Alignment:
Q  497 gtgagttaactcacgctgacttaagtcatgtgccgagt 534  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  37828582 gtgagttaactcacgctgatttaagtcatgtgtcgagt 37828545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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