View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7976_high_10 (Length: 318)
Name: NF7976_high_10
Description: NF7976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7976_high_10 |
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| [»] scaffold0018 (2 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 27 - 299
Target Start/End: Complemental strand, 149810 - 149538
Alignment:
| Q |
27 |
agcatagacctaaatccccttagatatggattagcttccctttcaatcaaccaaataacaattcctacaaaaatatgcattgatgttatcatcaaccaca |
126 |
Q |
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| T |
149810 |
agcatagacctaaatccccttagatatggattagcttccctttcaatcaaccaaataacaactcctacaaaaatatgcattgatgttatcatcaaccaca |
149711 |
T |
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| Q |
127 |
tctcttttgtaaaagcatccaaaaacatccatgtttgtttcgatttttcgggttgctcggtcaccaccatgtggaggccagattcaacataaggttgtga |
226 |
Q |
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| T |
149710 |
tctcttttgtaaaggcatccaaaaacatccatgtttgttttgatttttcgggttgctcggtaaccaccatgtggaggccagattcaacataaggttgtga |
149611 |
T |
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| Q |
227 |
gaagtcaactaaatgatatctgtatgccattatatctgtatcaccaactgcaccatctaatgtctgcaccata |
299 |
Q |
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| T |
149610 |
gaagtcaactaaatgatatctatatgccattatatctgtatcaccaactgcaccatctaatgtcttcaccata |
149538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 27 - 294
Target Start/End: Complemental strand, 141628 - 141361
Alignment:
| Q |
27 |
agcatagacctaaatccccttagatatggattagcttccctttcaatcaaccaaataacaattcctacaaaaatatgcattgatgttatcatcaaccaca |
126 |
Q |
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|||||||||| |||||| |||||| | ||| |||| |||||||||| ||||||||||| ||| | |||||||||||| | | | ||||||| ||||| |
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| T |
141628 |
agcatagaccctaatccctttagatcttcatttacttctctttcaatcagccaaataacaaatccaagaaaaatatgcatagctatcatcatcagccaca |
141529 |
T |
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| Q |
127 |
tctcttttgtaaaagcatccaaaaacatccatgtttgtttcgatttttcgggttgctcggtcaccaccatgtggaggccagattcaacataaggttgtga |
226 |
Q |
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| T |
141528 |
tctcttttttaaaggcatgcaaaaacatccatgtttctttcgatttttccggttgttcggtaaccaccatgtgaaggccagattcaacataaggttgtga |
141429 |
T |
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| Q |
227 |
gaagtcaactaaatgatatctgtatgccattatatctgtatcaccaactgcaccatctaatgtctgca |
294 |
Q |
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| T |
141428 |
gaagtccactaaatggtatcggtatgccactattgatgtatcaccaacagcagcatctaatgtctgca |
141361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 42 - 294
Target Start/End: Complemental strand, 24898559 - 24898307
Alignment:
| Q |
42 |
ccccttagatatggattagcttccctttcaatcaaccaaataacaattcctacaaaaatatgcattgatgttatcatcaaccacatctcttttgtaaaag |
141 |
Q |
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| T |
24898559 |
cccctaagatctgggttagcttcccgttcaatcaaccaaataacaacacctacaaaaatatgcatagctgctatcatcagccacatctcttttgtaaagg |
24898460 |
T |
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| Q |
142 |
catccaaaaacatccatgtttgtttcgatttttcgggttgctcggtcaccaccatgtggaggccagattcaacataaggttgtgagaagtcaactaaatg |
241 |
Q |
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| T |
24898459 |
catccaaaaacatccatgtttcttttgattttacgggttgctcagtaaccaccatctggaggccagattcaacatatggttgtgaaaagtccactaaatg |
24898360 |
T |
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| Q |
242 |
atatctgtatgccattatatctgtatcaccaactgcaccatctaatgtctgca |
294 |
Q |
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| T |
24898359 |
atatctgtattccactatggctgtgtcaccaactgcagcatccaatgtctgca |
24898307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 42 - 294
Target Start/End: Complemental strand, 24910661 - 24910409
Alignment:
| Q |
42 |
ccccttagatatggattagcttccctttcaatcaaccaaataacaattcctacaaaaatatgcattgatgttatcatcaaccacatctcttttgtaaaag |
141 |
Q |
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| T |
24910661 |
cccctaagatctgggttagcttcccgttcaatcaaccaaataacaacacctacaaaaatatgcgtagctgctatcatcagccacatctctttcgtaaagg |
24910562 |
T |
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| Q |
142 |
catccaaaaacatccatgtttgtttcgatttttcgggttgctcggtcaccaccatgtggaggccagattcaacataaggttgtgagaagtcaactaaatg |
241 |
Q |
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||||||||||||||||||||| ||| |||||| | |||||||| || |||||||| |||||||||||||||||||| |||||||| ||||| |||||||| |
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| T |
24910561 |
catccaaaaacatccatgtttcttttgattttgctggttgctcagtaaccaccatctggaggccagattcaacatacggttgtgaaaagtccactaaatg |
24910462 |
T |
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| Q |
242 |
atatctgtatgccattatatctgtatcaccaactgcaccatctaatgtctgca |
294 |
Q |
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| T |
24910461 |
atatctgtattccactatcgctgtgtcaccaactgcagcatccaatgtctgca |
24910409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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