View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7976_high_3 (Length: 569)
Name: NF7976_high_3
Description: NF7976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7976_high_3 |
 | |
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| [»] scaffold0105 (1 HSPs) |
| | |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 9 - 301
Target Start/End: Original strand, 1182042 - 1182334
Alignment:
| Q |
9 |
tgagaagaataacacccgtgaattagttgaattaccagagaagaagaaaaccattgatgtgaaatgaattttcaaggtaaaaatgaatccagatggcaca |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1182042 |
tgagaagaataacacccgtgaattagttgaattatcagagaagaagaaaaccattgatgtgaaatgaattttcaaggtaaaaatgaatccagatggcaca |
1182141 |
T |
|
| Q |
109 |
gtttcaaaacacaaagcaaggctagtggctagaggcttcctgcagagatatggtgttgattataatgaagtgtttgcactagtggcaagattagaaaatg |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1182142 |
gtttcaaaacacaaagcaaggctagtggctagaggcttcctgcagcgatatggtgttgattataatgaagtgtttgcactagtggcaagattagaaaatg |
1182241 |
T |
|
| Q |
209 |
ggagattggttgttgcattagatagcagtaagaaatggtcattgtttcatttagatgtgaagtcttgattcttaaatggactattagaagaaa |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1182242 |
ggagattggttgttgcattagatagcagtaagaaatgatcattgtttcatttagatgtgaagtcttgattcttaaatggactattagaagaaa |
1182334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 348 - 549
Target Start/End: Original strand, 1182340 - 1182541
Alignment:
| Q |
348 |
gcatatggtatacgaactgcataagacactttatggattgaagcaggctcctagagaatggaacaaatgaattgatcagttcttgatttaaattggattt |
447 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1182340 |
gcatatggtatacgaactgcataagacactttatggattgaagcaggctcctagagaatggaacaaatgaattgatcagttcttgatttaaattggattt |
1182439 |
T |
|
| Q |
448 |
aaaagatgcaaagctgaatatggtatgtatgttcagaacttgagtgaaagtgatatcacaatgatataattatatgtgaatgagctattggtaactggaa |
547 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1182440 |
aaaagatgcaaagttgaatatggtatgtatgttcagaacttgagtgaaagtgatatcacaatgatataattatatgtgaatgagctattggtaactggaa |
1182539 |
T |
|
| Q |
548 |
gt |
549 |
Q |
| |
|
|| |
|
|
| T |
1182540 |
gt |
1182541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 9 - 356
Target Start/End: Original strand, 18194013 - 18194360
Alignment:
| Q |
9 |
tgagaagaataacacccgtgaattagttgaattaccagagaagaagaaaaccattgatgtgaaatgaattttcaaggtaaaaatgaatccagatggcaca |
108 |
Q |
| |
|
|||||||||||||||| | || | ||||| |||| || |||||||||||||||||||| ||||| ||||||||||| ||| ||||||| ||||| || |
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|
| T |
18194013 |
tgagaagaataacacctggaaacttgttgagctacctgataagaagaaaaccattgatgttaaatggattttcaaggtgaaattgaatcctgatggttca |
18194112 |
T |
|
| Q |
109 |
gtttcaaaacacaaagcaaggctagtggctagaggcttcctgcagagatatggtgttgattataatgaagtgtttgcactagtggcaagattagaaaatg |
208 |
Q |
| |
|
| || ||| ||||||| || ||||||||||||| ||||| ||||||||||||||||| |||||||| || ||||| | ||| || ||| |||||| | |
|
|
| T |
18194113 |
atctctaaatacaaagccagattagtggctagaggtttcctacagagatatggtgttgactataatgaggtatttgctccagttgctagactagaaacta |
18194212 |
T |
|
| Q |
209 |
ggagattggttgttgcattagatagcagtaagaaatggtcattgtttcatttagatgtgaagtcttgattcttaaatggactattagaagaaagtgtata |
308 |
Q |
| |
|
|||||||| || ||| | | |||||||| || |||||| | | ||||||||||| |||||| ||| | ||||||| | | ||||| | || || |
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|
| T |
18194213 |
ttagattggtagtggcacttgcaagcagtaaaaactggtcactatcacatttagatgtaaagtctgcatttctgaatggaccacttgaagagaaagtgta |
18194312 |
T |
|
| Q |
309 |
tgttactcaacctccaggatttgaagtaaaagtaaaggagcatatggt |
356 |
Q |
| |
|
| |||| ||||| |||||||||||||||| | |||||||||||||| |
|
|
| T |
18194313 |
tattacacaaccaccaggatttgaagtaagtgggaaggagcatatggt |
18194360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 28 - 510
Target Start/End: Complemental strand, 8169841 - 8169359
Alignment:
| Q |
28 |
gaattagttgaattaccagagaagaagaaaaccattgatgtgaaatgaattttcaaggtaaaaatgaatccagatggcacagtttcaaaacacaaagcaa |
127 |
Q |
| |
|
||||||||| | ||||||| ||||||||||| |||| |||||||||| |||||||| || ||| |||||||| ||| |||| ||||||| |||||||||| |
|
|
| T |
8169841 |
gaattagttaacttaccagcgaagaagaaaaacattaatgtgaaatggattttcaaagtcaaattgaatccaaatgacacattttcaaagcacaaagcaa |
8169742 |
T |
|
| Q |
128 |
ggctagtggctagaggcttcctgcagagatatggtgttgattataatgaagtgtttgcactagtggcaagattagaaaatgggagattggttgttgcatt |
227 |
Q |
| |
|
| ||||| |||||||||||||| || ||||| |||| ||||||||||| ||||||| ||| |||| |||||| |||||||||| ||||||| |
|
|
| T |
8169741 |
gactagtagctagaggcttcctacattaatatgaaattgactataatgaagtctttgcaccagtatcaaggatagaaatattgagattggttattgcatt |
8169642 |
T |
|
| Q |
228 |
agatagcagtaagaaatggtcattgtttcatttagatgtgaagtcttgattcttaaatggactattagaagaaagtgtatatgttactcaacctccagga |
327 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||| ||||||| | ||||||||||| |||||| | || |
|
|
| T |
8169641 |
aaccagcagtaagaaatggtcattgtttcatttagatgtaaagtctgcattcctaaatggactattggaagaaactatatatgttactgaacctctaaga |
8169542 |
T |
|
| Q |
328 |
tttgaagtaaaagtaaaggagcatatggtatacgaactgcataagacactttatggattgaagcaggctcctagagaatggaacaaatgaattgatcagt |
427 |
Q |
| |
|
|||||| | | || || |||||||||||| ||| || | ||||| |||||||||| || ||| ||||| |||||| ||||||||| ||||||| ||| |
|
|
| T |
8169541 |
tttgaaatcagaggaagggagcatatggtgtacaaattacataaatcactttatggctttaagtaggcttctagagcatggaacaagagaattgactagt |
8169442 |
T |
|
| Q |
428 |
tcttgatttaaattggatttaaaagatgcaaagctgaatatggtatgtatgttcagaacttgagtgaaagtgatatcacaatg |
510 |
Q |
| |
|
|| ||||| || ||||||| ||||||||||||||||| ||||||||| |||||||||||| | |||| | |||||||| |||| |
|
|
| T |
8169441 |
tcatgattcaacttggattcaaaagatgcaaagctgagtatggtatgcatgttcagaactcgggtgagactgatatcataatg |
8169359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 49 - 485
Target Start/End: Complemental strand, 32369486 - 32369050
Alignment:
| Q |
49 |
aagaagaaaaccattgatgtgaaatgaattttcaaggtaaaaatgaatccagatggcacagtttcaaaacacaaagcaaggctagtggctagaggcttcc |
148 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||| || ||| ||||||| |||| || |||| ||| ||||||| || | || || ||||| ||| |
|
|
| T |
32369486 |
aagaagaaaaccattgatgttaaatggattttcaaagtgaaattgaatcctgatgaatcattttccaaatacaaagccagattggttgccagaggtttct |
32369387 |
T |
|
| Q |
149 |
tgcagagatatggtgttgattataatgaagtgtttgcactagtggcaagattagaaaatgggagattggttgttgcattagatagcagtaagaaatggtc |
248 |
Q |
| |
|
| |||||||||||||||| |||||||| || ||||| | ||| || | |||||||| | |||||||| || ||| | | | || ||||| ||||| |
|
|
| T |
32369386 |
tatagagatatggtgttgactataatgaggtatttgctccagtagctaaattagaaactataagattggtggtggcactggcctgtagcaagaattggtc |
32369287 |
T |
|
| Q |
249 |
attgtttcatttagatgtgaagtcttgattcttaaatggactattagaagaaagtgtatatgttactcaacctccaggatttgaagtaaaagtaaaggag |
348 |
Q |
| |
|
||| | |||| ||||||| |||||| ||| | ||||||| |||||||||| | | |||||||| ||||| || | |||||||||||||| |||||| |
|
|
| T |
32369286 |
attatctcatatagatgttaagtctgcatttctgaatggaccattagaagaagatatgtatgttacacaaccacctgaatttgaagtaaaagggaaggag |
32369187 |
T |
|
| Q |
349 |
catatggtatacgaactgcataagacactttatggattgaagcaggctcctagagaatggaacaaatgaattgatcagttcttgatttaaattggattta |
448 |
Q |
| |
|
||| |||| ||| | | || || |||||||||| ||||| || | ||||||| ||||||||| | |||||||||||| | || ||||||| || | |
|
|
| T |
32369186 |
catgtggtgtacaagttacacaaagcactttatggcttgaaacaaacacctagagcatggaacaagaggattgatcagttcctacttcaaattggtttca |
32369087 |
T |
|
| Q |
449 |
aaagatgcaaagctgaatatggtatgtatgttcagaa |
485 |
Q |
| |
|
| | |||||||||||| ||||| || ||||||||||| |
|
|
| T |
32369086 |
agaaatgcaaagctgagtatggaatatatgttcagaa |
32369050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 5e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 9 - 486
Target Start/End: Complemental strand, 4959492 - 4959015
Alignment:
| Q |
9 |
tgagaagaataacacccgtgaattagttgaattaccagagaagaagaaaaccattgatgtgaaatgaattttcaaggtaaaaatgaatccagatggcaca |
108 |
Q |
| |
|
|||||||||||||||| | || | ||||| |||| || |||||||||||||||||||| ||||| ||||||||||| ||| |||||| ||||| || |
|
|
| T |
4959492 |
tgagaagaataacacctggaaacttgttgagctacctgataagaagaaaaccattgatgttaaatggattttcaaggtgaaattgaatcatgatgggtca |
4959393 |
T |
|
| Q |
109 |
gtttcaaaacacaaagcaaggctagtggctagaggcttcctgcagagatatggtgttgattataatgaagtgtttgcactagtggcaagattagaaaatg |
208 |
Q |
| |
|
| || ||| ||||||| || |||| |||||||| ||||| |||||||||||||| || |||||||| || ||||| | ||| || ||| |||||| | |
|
|
| T |
4959392 |
atctctaaatacaaagccagattagttgctagaggtttcctacagagatatggtgtagactataatgaggtatttgctccagttgctagactagaaacta |
4959293 |
T |
|
| Q |
209 |
ggagattggttgttgcattagatagcagtaagaaatggtcattgtttcatttagatgtgaagtcttgattcttaaatggactattagaagaaagtgtata |
308 |
Q |
| |
|
|||||||| || ||| | | |||||||| || |||||||| | ||||||||||| |||||| ||| | ||||||| | | |||||| ||| || |
|
|
| T |
4959292 |
ttagattggtagtggcacttgtaagcagtaaaaactggtcattatcacatttagatgtaaagtctgcatttctgaatggaccacttgaagaagatgtgta |
4959193 |
T |
|
| Q |
309 |
tgttactcaacctccaggatttgaagtaaaagtaaaggagcatatggtatacgaactgcataagacactttatggattgaagcaggctcctagagaatgg |
408 |
Q |
| |
|
| || | ||||| |||| ||||||||||| | ||||||||||||||| ||| | | || || | || ||||| ||||| || | ||||||| |||| |
|
|
| T |
4959192 |
tattgcacaaccaccagtatttgaagtaagtggaaaggagcatatggtgtacaagttacacaaagccctctatggcttgaaacaagtacctagagcatgg |
4959093 |
T |
|
| Q |
409 |
aacaaatgaattgatcagttcttgatttaaattggatttaaaagatgcaaagctgaatatggtatgtatgttcagaac |
486 |
Q |
| |
|
|| || | |||||||||||| | || |||||||||| |||| ||||||||| ||||||||||| ||||| |||||| |
|
|
| T |
4959092 |
aataagaggattgatcagttcctacttcaaattggattcaaaaaatgcaaagcagaatatggtatatatgtccagaac |
4959015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 65 - 147
Target Start/End: Original strand, 17071 - 17153
Alignment:
| Q |
65 |
atgtgaaatgaattttcaaggtaaaaatgaatccagatggcacagtttcaaaacacaaagcaaggctagtggctagaggcttc |
147 |
Q |
| |
|
|||| ||||| |||||||| || || ||||| || |||||||| ||||||| |||||||||||| |||| |||| ||||||| |
|
|
| T |
17071 |
atgtaaaatggattttcaaagtcaagctgaatacaaatggcacactttcaaagcacaaagcaaggttagtagctaaaggcttc |
17153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 482
Target Start/End: Original strand, 5242572 - 5242734
Alignment:
| Q |
320 |
ctccaggatttgaagtaaaagtaaaggagcatatggtatacgaactgcataagacactttatggattgaagcaggctcctagagaatggaacaaatgaat |
419 |
Q |
| |
|
|||| |||||||||||||||| |||||| || ||||| ||| | | || || | || ||||| ||||| || || |||||| ||||||||| | || |
|
|
| T |
5242572 |
ctcctggatttgaagtaaaaggaaaggatcaaatggtgtacaagttacacaaagctctctatggcttgaaacaagcatctagagcatggaacaagaggat |
5242671 |
T |
|
| Q |
420 |
tgatcagttcttgatttaaattggatttaaaagatgcaaagctgaatatggtatgtatgttca |
482 |
Q |
| |
|
|||||||||| |||||||||| ||||| | |||||||||||| ||||| || |||||||| |
|
|
| T |
5242672 |
tgatcagttcccactttaaattggttttaagaaatgcaaagctgagtatggaatatatgttca |
5242734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 422
Target Start/End: Complemental strand, 13829384 - 13829332
Alignment:
| Q |
370 |
aagacactttatggattgaagcaggctcctagagaatggaacaaatgaattga |
422 |
Q |
| |
|
|||||||| ||||||||||||||||| || |||| ||||||||| ||||||| |
|
|
| T |
13829384 |
aagacactatatggattgaagcaggcaccaagagcttggaacaaaagaattga |
13829332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 65 - 147
Target Start/End: Original strand, 8190496 - 8190578
Alignment:
| Q |
65 |
atgtgaaatgaattttcaaggtaaaaatgaatccagatggcacagtttcaaaacacaaagcaaggctagtggctagaggcttc |
147 |
Q |
| |
|
|||| ||||| |||||||| || || ||||| || |||||||| ||||||| |||||||||||| |||| |||| ||||||| |
|
|
| T |
8190496 |
atgtaaaatggattttcaaagtcaagctgaatacaaatggcacactttcaaagcacaaagcaaggttagtagctaaaggcttc |
8190578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 413
Target Start/End: Original strand, 50935197 - 50935258
Alignment:
| Q |
352 |
atggtatacgaactgcataagacactttatggattgaagcaggctcctagagaatggaacaa |
413 |
Q |
| |
|
||||| ||| |||||||||| || | |||||||| |||||||||||||||| ||||||||| |
|
|
| T |
50935197 |
atggtgtacaaactgcataaagcattatatggattaaagcaggctcctagagcatggaacaa |
50935258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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