View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7976_low_14 (Length: 263)
Name: NF7976_low_14
Description: NF7976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7976_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 20 - 249
Target Start/End: Complemental strand, 32268457 - 32268228
Alignment:
| Q |
20 |
ttaccccacacaatgctaccacggggccgtagagctttcactttccaaactccgcaagattaatctctcttatcattcctacatcgatgacgaatttatt |
119 |
Q |
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| T |
32268457 |
ttaccccacacaatgctaccacggggccgtagagctttcactttccaaactccgcaagattaatctctcttatcattcctacatcgatgacgaatttatt |
32268358 |
T |
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| Q |
120 |
ctccacttgtttgaaagctgtaagctgctcgaagaggccatcatgttgccatgtgttgacataacctttgttggtattgctaatgccctccgtgagagac |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32268357 |
ctccacttgtttgaaagctgtaagctgctcgaagaggccatcatgttgccatgtgttgacataacctttgttggtattgctaatgccctccgtgagagac |
32268258 |
T |
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| Q |
220 |
caacattgaggtctgtatccttttccaata |
249 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
32268257 |
caacattgaggtctgtatccttttccaata |
32268228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 150 - 249
Target Start/End: Original strand, 41900758 - 41900857
Alignment:
| Q |
150 |
gaagaggccatcatgttgccatgtgttgacataacctttgttggtattgctaatgccctccgtgagagaccaacattgaggtctgtatccttttccaata |
249 |
Q |
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| T |
41900758 |
gaagaggccatcttgttgacatgttttgatacaacctttgatggtcttgcttctgctctccgccagagaccaacattgaggtctttatcattttccaata |
41900857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 66 - 247
Target Start/End: Complemental strand, 27923048 - 27922867
Alignment:
| Q |
66 |
aaactccgcaagattaatctctcttatcattcctacatcgatgacgaatttattctccacttgtttgaaagctgtaagctgctcgaagaggccatcatgt |
165 |
Q |
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| T |
27923048 |
aaactccgcaaggttaatttctctggtcattccgacatcaatgacaaatcgcttctccatttgttcaaaagttgtaaggttctcgaagaggctatcatgt |
27922949 |
T |
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| Q |
166 |
tgccatgtgttgacataacctttgttggtattgctaatgccctccgtgagagaccaacattgaggtctgtatccttttccaa |
247 |
Q |
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| T |
27922948 |
tgcactgttttgacataacctttgatggaattgctaaagctctgcgcgagagaccaaccttgaggtctttatcattttccaa |
27922867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 18314967 - 18315021
Alignment:
| Q |
192 |
ggtattgctaatgccctccgtgagagaccaacattgaggtctgtatccttttcca |
246 |
Q |
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| T |
18314967 |
ggtattgcttttgctctccgtgagagaccaactttgaggtctttatccatttcca |
18315021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 1601214 - 1601177
Alignment:
| Q |
207 |
ctccgtgagagaccaacattgaggtctgtatccttttc |
244 |
Q |
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| T |
1601214 |
ctccgtgagagaccaacattgaggtctttatccttttc |
1601177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 21833652 - 21833689
Alignment:
| Q |
207 |
ctccgtgagagaccaacattgaggtctgtatccttttc |
244 |
Q |
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| T |
21833652 |
ctccgtgagagaccaacattgagttctttatccttttc |
21833689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 514008 - 514061
Alignment:
| Q |
192 |
ggtattgctaatgccctccgtgagagaccaacattgaggtctgtatccttttcc |
245 |
Q |
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| T |
514008 |
ggtattgcttctgctctccgtgagagaccaacattgacctctatatccttttcc |
514061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 19467792 - 19467832
Alignment:
| Q |
208 |
tccgtgagagaccaacattgaggtctgtatccttttccaat |
248 |
Q |
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| T |
19467792 |
tccgtgagagaccaacattgaggtctttatcgttttgcaat |
19467832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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