View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7976_low_16 (Length: 201)

Name: NF7976_low_16
Description: NF7976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7976_low_16
NF7976_low_16
[»] chr1 (4 HSPs)
chr1 (1-187)||(18438560-18438743)
chr1 (1-187)||(18449418-18449601)
chr1 (1-187)||(18454511-18454694)
chr1 (96-147)||(42080703-42080754)
[»] chr2 (5 HSPs)
chr2 (1-187)||(31320214-31320411)
chr2 (3-157)||(9446963-9447128)
chr2 (96-154)||(21949909-21949967)
chr2 (96-144)||(14555896-14555944)
chr2 (96-156)||(13698129-13698189)
[»] chr5 (3 HSPs)
chr5 (1-164)||(31610025-31610199)
chr5 (95-150)||(11888191-11888246)
chr5 (96-147)||(33417438-33417489)
[»] chr7 (4 HSPs)
chr7 (96-144)||(8425057-8425105)
chr7 (2-156)||(30559269-30559434)
chr7 (96-147)||(49094557-49094608)
chr7 (96-147)||(38836146-38836197)
[»] chr6 (1 HSPs)
chr6 (95-147)||(6982841-6982893)
[»] chr4 (3 HSPs)
chr4 (96-147)||(2048991-2049042)
chr4 (96-147)||(39735820-39735871)
chr4 (96-145)||(3958957-3959006)
[»] scaffold0141 (1 HSPs)
scaffold0141 (96-144)||(16545-16593)
[»] chr8 (1 HSPs)
chr8 (97-142)||(19168189-19168234)
[»] chr3 (1 HSPs)
chr3 (96-156)||(3830691-3830751)


Alignment Details
Target: chr1 (Bit Score: 169; Significance: 8e-91; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 18438743 - 18438560
Alignment:
Q  1 cactaagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaacaactgcaagatatggaactttcaacaagacagtcagattg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||    
T  18438743 cactaagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaac---tgcaagatatggaactttcaacaagacagtcagattg 18438647  T
Q  101 cttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttgcttcttatgactgcctcctttactcttcttc 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  18438646 cttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttgattcttatgactgcctcctttactcttcttc 18438560  T

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Target: chr1; HSP #2
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 18449601 - 18449418
Alignment:
Q  1 cactaagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaacaactgcaagatatggaactttcaacaagacagtcagattg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||    
T  18449601 cactaagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaac---tgcaagatatggaactttcaacaagacagtcagattg 18449505  T
Q  101 cttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttgcttcttatgactgcctcctttactcttcttc 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  18449504 cttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttgattcttatgactgcctcctttactcttcttc 18449418  T

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Target: chr1; HSP #3
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 18454694 - 18454511
Alignment:
Q  1 cactaagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaacaactgcaagatatggaactttcaacaagacagtcagattg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||    
T  18454694 cactaagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaac---tgcaagatatggaactttcaacaagacagtcagattg 18454598  T
Q  101 cttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttgcttcttatgactgcctcctttactcttcttc 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  18454597 cttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttgattcttatgactgcctcctttactcttcttc 18454511  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 147
Target Start/End: Original strand, 42080703 - 42080754
Alignment:
Q  96 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactact 147  Q
    ||||||||||||| |||||||||||||||||  |||| ||||||||||||||    
T  42080703 gattgcttttgattacaccctttttggaacgagtttggatgtgctcactact 42080754  T

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Target: chr2 (Bit Score: 116; Significance: 3e-59; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 31320411 - 31320214
Alignment:
Q  1 cactaagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaacaactgcaagatatggaactttcaacaagacagtca----- 95  Q
    ||||||||||||||||||||||||||| |||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||         
T  31320411 cactaagatagattcagcaaccatctagaatagcagaagatgaacccaaataagaacaacaactgcaagatatggaactttcaacaagacaatcacatat 31320312  T
Q  96 ------gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttgcttcttatgactgcctcctttactcttcttc 187  Q
          |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||| ||| ||||||| |||||||||||||    
T  31320311 atttgggattgcttttgatcacaccctttttggaacgcgtttgtatgagctcactactagtgtattgcttctgatgtctgcctcttttactcttcttc 31320214  T

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Target: chr2; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 3 - 157
Target Start/End: Complemental strand, 9447128 - 9446963
Alignment:
Q  3 ctaagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaacaactgcaagatatggaactttcaacaagacagtca------- 95  Q
    |||||||||||||||| |||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||           
T  9447128 ctaagatagattcagccaccatccaaaataacagaagttgaacccacataagaacaacaactgcaagatatggaactttcaacaagacagtcacatatat 9447029  T
Q  96 ----gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttgc 157  Q
        |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  9447028 ttgggattgcttttgatcacaccctttttggaacgcgtttgtgtgtgctcactactagtgttttgc 9446963  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 96 - 154
Target Start/End: Original strand, 21949909 - 21949967
Alignment:
Q  96 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttt 154  Q
    ||||||||||||| ||||||||||| |||||  ||||||||||||||||||||||||||    
T  21949909 gattgcttttgattacaccctttttagaacgagtttgtatgtgctcactactagtgttt 21949967  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 14555944 - 14555896
Alignment:
Q  96 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcact 144  Q
    |||||||||||||||||||||||||||||||  ||||||| || |||||    
T  14555944 gattgcttttgatcacaccctttttggaacgagtttgtatatgatcact 14555896  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 156
Target Start/End: Complemental strand, 13698189 - 13698129
Alignment:
Q  96 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttg 156  Q
    ||||||||||||||||||||||  ||||||   |||| |||||||||||||| ||| ||||    
T  13698189 gattgcttttgatcacacccttcatggaaccagtttgaatgtgctcactacttgtgctttg 13698129  T

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Target: chr5 (Bit Score: 109; Significance: 5e-55; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 31610199 - 31610025
Alignment:
Q  1 cactaagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaacaactgcaagatatggaactttcaacaagacagtc------ 94  Q
    |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||          
T  31610199 cactaagatagattcagcaaccatctaaaatatcagaagttgaacccaaataagaacaacaactacaaaatatggaactttcaacaagacagtcgcatat 31610100  T
Q  95 -----agattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttgcttcttat 164  Q
          ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  31610099 atttgggattgcttttgatcacaccctttttagaacgcgtttgtatgtgctcactactagtgttttgcttcttat 31610025  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 95 - 150
Target Start/End: Original strand, 11888191 - 11888246
Alignment:
Q  95 agattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagt 150  Q
    ||||||||||||||||||||||| ||||||||  ||||||| ||||||||||||||    
T  11888191 agattgcttttgatcacacccttcttggaacgaatttgtatatgctcactactagt 11888246  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 96 - 147
Target Start/End: Complemental strand, 33417489 - 33417438
Alignment:
Q  96 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactact 147  Q
    |||| |||||||| ||||||||||| |||||  |||||||||||||||||||    
T  33417489 gattacttttgattacaccctttttagaacgaatttgtatgtgctcactact 33417438  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 8425105 - 8425057
Alignment:
Q  96 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcact 144  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||||||    
T  8425105 gattgcttttgatcacacccttcttggaacgagtttgtatgtgctcact 8425057  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 156
Target Start/End: Original strand, 30559269 - 30559434
Alignment:
Q  2 actaagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaacaactgcaagatatggaactttcaacaagacagtca------ 95  Q
    |||||||||||||||||||||| | |||||||||||||  |||  |||||| ||||| ||||||||  |||  ||||| |||||| ||| ||||          
T  30559269 actaagatagattcagcaaccacccaaaataacagaagccgaaaccaaatatgaacagcaactgcagaatacagaactgtcaacatgaccgtcacaaatc 30559368  T
Q  96 -----gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttg 156  Q
         ||||||||||||| ||||||||||||||||   ||| ||||||||||| ||| ||| ||||    
T  30559369 tttgggattgcttttgataacaccctttttggaacaagtttctatgtgctcacgacttgtgctttg 30559434  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 147
Target Start/End: Original strand, 49094557 - 49094608
Alignment:
Q  96 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactact 147  Q
    ||||||||||||| ||||| |||||||||||  |||||||||||||||||||    
T  49094557 gattgcttttgataacaccttttttggaacgtgtttgtatgtgctcactact 49094608  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 96 - 147
Target Start/End: Complemental strand, 38836197 - 38836146
Alignment:
Q  96 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactact 147  Q
    ||||||||||||| ||||| |||||||||||  ||||||| |||||||||||    
T  38836197 gattgcttttgataacaccatttttggaacgagtttgtatatgctcactact 38836146  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 95 - 147
Target Start/End: Complemental strand, 6982893 - 6982841
Alignment:
Q  95 agattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactact 147  Q
    |||||||||||||| ||||||||||| |||||  |||||||||||||||||||    
T  6982893 agattgcttttgattacacccttttttgaacgagtttgtatgtgctcactact 6982841  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 147
Target Start/End: Complemental strand, 2049042 - 2048991
Alignment:
Q  96 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactact 147  Q
    ||||||||||||| |||||||||||||||||  ||||||| |||||||||||    
T  2049042 gattgcttttgataacaccctttttggaacgagtttgtatatgctcactact 2048991  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 147
Target Start/End: Complemental strand, 39735871 - 39735820
Alignment:
Q  96 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactact 147  Q
    ||||||||||||| |||||||| ||||||||  |||||||||||||||||||    
T  39735871 gattgcttttgattacacccttcttggaacgagtttgtatgtgctcactact 39735820  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 3958957 - 3959006
Alignment:
Q  96 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcacta 145  Q
    ||||||||||||| ||||||||||| |||||  |||||||||||||||||    
T  3958957 gattgcttttgatgacaccctttttagaacgagtttgtatgtgctcacta 3959006  T

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Target: scaffold0141 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 16545 - 16593
Alignment:
Q  96 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcact 144  Q
    |||||||||||||||||||||| ||||||||  ||| ||||||||||||    
T  16545 gattgcttttgatcacacccttcttggaacgagtttatatgtgctcact 16593  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 97 - 142
Target Start/End: Complemental strand, 19168234 - 19168189
Alignment:
Q  97 attgcttttgatcacaccctttttggaacgcttttgtatgtgctca 142  Q
    |||||||||||| ||||||||||| |||||  ||||||||||||||    
T  19168234 attgcttttgatgacaccctttttagaacgagtttgtatgtgctca 19168189  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 156
Target Start/End: Original strand, 3830691 - 3830751
Alignment:
Q  96 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttg 156  Q
    |||||||||||||||||| |||  |||||||  |||| |||||||||||||| ||| ||||    
T  3830691 gattgcttttgatcacactcttcatggaacgagtttgaatgtgctcactacttgtgctttg 3830751  T

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