View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7976_low_2 (Length: 612)
Name: NF7976_low_2
Description: NF7976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7976_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 540; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 18 - 600
Target Start/End: Original strand, 48877349 - 48877925
Alignment:
| Q |
18 |
ctttatgcaatacgaaatggagacagtgttgaggccttactttgaacttacaaatgctgtccggattagagacttggagctgtttaggaatattgcagat |
117 |
Q |
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| T |
48877349 |
ctttatgcaatacgaaatggagacagtgttgaggccttactttgaacttacaaatgctgtccggattagagacttggagctgtttaggaatattgcagat |
48877448 |
T |
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| Q |
118 |
aagtttttggtagtaattaagtttcatagttagagaattgacacttaaggattagccatatatgtagcctccctagttagcttatgggaatgggacacta |
217 |
Q |
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| T |
48877449 |
aagtttttggtagtaattaagtttcatagttagagaatagacacttgaggattagccatatatgtagcctccctagttagcttatgg------gacacta |
48877542 |
T |
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| Q |
218 |
cattagcttatctcctagaaaactctgctgacgagtttggacatacaatctattacaatgaaaccaaactaaggtttattaaaagaatcgaccactaatt |
317 |
Q |
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| T |
48877543 |
cattagcttatctcctagaaaactctgctgacgagtttggacatacaatctattacaatgaaaccaaactaaggtttattaaaagaatcgaccactaatt |
48877642 |
T |
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| Q |
318 |
ttgcatctaattcaaaaataacattattcaaacccaactttgaagtccatttgatagcttgcaataaaccatttgcttcaccttccttgactaataacac |
417 |
Q |
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| T |
48877643 |
ttgcatctaattcaaaaataacattattcaaacccaactttgaagtccatttgatagcttgcaataaaccatttgcttcaccttccttgactaataacac |
48877742 |
T |
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| Q |
418 |
aggagcataccttgtagttttagctttaataaaattctcatgatggtcgctaagacagatactgatacccactttgttattcataaaagctacattgatg |
517 |
Q |
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| T |
48877743 |
aggagcataccttgtagttttagctttaataaaattctcatgatggtcgctaagacagatactgatacccactttgttattcataaaagctacattgatg |
48877842 |
T |
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| Q |
518 |
ttacattttaatttttcaagaggaggtcctgcccattttgccaaatctggttgtggttgtgaggctacaacatttcacatatt |
600 |
Q |
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| T |
48877843 |
ttacattttaatttttcaagaggaggtcctgcccattttgtcaaatctggttgcggttgtggggctacaacatttcacatatt |
48877925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 298 - 378
Target Start/End: Original strand, 33016147 - 33016227
Alignment:
| Q |
298 |
aaaagaatcgaccactaattttgcatctaattcaaaaataacattattcaaacccaactttgaagtccatttgatagcttg |
378 |
Q |
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| T |
33016147 |
aaaaaaatctaccattattttcgcacctaactcaaaaataacattattcaacctcaactctgatgttcacttgatagcttg |
33016227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 123
Target Start/End: Complemental strand, 53454423 - 53454373
Alignment:
| Q |
73 |
gctgtccggattagagacttggagctgtttaggaatattgcagataagttt |
123 |
Q |
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| T |
53454423 |
gctgtccgtattggagatttggagctgtttaggaacattgcagataagttt |
53454373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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