View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7976_low_4 (Length: 445)
Name: NF7976_low_4
Description: NF7976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7976_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 7310100 - 7309865
Alignment:
| Q |
16 |
aagaacaagcggaggaggaggaggaagagaaaggtttctccaacaaaccctactccgtcgaatcgattcatgcaaatcaagattctccactgctgatgat |
115 |
Q |
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| T |
7310100 |
aagaacaagcggaggaggaggaggaagagaaaggtttctccaacaaaccctactccgtcgaatcgattcatgcaaatcaagattctccactgctgatgat |
7310001 |
T |
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| Q |
116 |
atcgtcgaccatctccgttcaacttactctagttatcaccgaatgaagtttcaaactctccttttttcggttcgaaaagctcttcttgcttccaacaaca |
215 |
Q |
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| T |
7310000 |
atcgtcgaccatctccgttcaacttactctagttatcaccgaatgaagtttcaaactctccttttttcggttcgaaaagctcttcttgcttccaacaaca |
7309901 |
T |
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| Q |
216 |
atcaagcttcatatcattctcgaaggagacgaagga |
251 |
Q |
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| T |
7309900 |
atcaagcttcatatcattctcgaaggagacgaagga |
7309865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 306 - 427
Target Start/End: Complemental strand, 7309810 - 7309689
Alignment:
| Q |
306 |
atagttctcgaaagagacgtaggaatgatgaatctcaaaatgatgattctgaaaatgatcatgaaataatgagcacacaaacttcgtctgattattctta |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7309810 |
atagttctcgaaagagacgtaggaatgatgaatctcaaaatgatgattctgaaaatgatcatgaaataatgagcacacaaacttcgtctgattattctta |
7309711 |
T |
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| Q |
406 |
tcgaaatagacataggattgat |
427 |
Q |
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| T |
7309710 |
tcgaaataggcataggattgat |
7309689 |
T |
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