View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7976_low_5 (Length: 442)
Name: NF7976_low_5
Description: NF7976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7976_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 4496333 - 4496761
Alignment:
| Q |
1 |
tttgttgcaattaaaactcatttagtcactgcaatcagc---tagttaggaccatcaaatggagattcaataatatgcattctgactctagtgaatcgga |
97 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4496333 |
tttgttgtaattaaaactcatttagtcactgcaatcagcagctagttaggaccatcaaatggagattcaataatatgcattctgactctagtgaatagga |
4496432 |
T |
|
| Q |
98 |
ttcaaaacgcaaacatcgagtttgagtcatctgtttttcatataactgtttcattttgctagctgcagtgactgtgtgatttttaaaccatggcaaatcc |
197 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4496433 |
ttcaaaacgcaaacattgagtttgagtcatctgtttttcatataactgtttcattttgctagctgcagtgactgtgtgatttttaaaccatagcaaatcc |
4496532 |
T |
|
| Q |
198 |
atatcatatttctccatcactgactgtattctgttaattaaatagaagagaccattgaaatccattacatatatgtgactgcatgattagttttactcat |
297 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4496533 |
atatcatctttctccatcactgactgtattctgttaattaaaaagaagagaccattgaaatccattacatatatgtgactgcgtgattagttttactcat |
4496632 |
T |
|
| Q |
298 |
gcttatgttaacttcatttgccaaaggatggaagcccttgcttttacagtcttggaaaagttgagctctgcagcttacaaagagctcgaaatcatttgga |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4496633 |
gcttatgttaacttcatttgccaaaggatggaagcccttgcttttacagtcttggaaaagttgagctctgcagcttacaaagagctcgaaatcatttgga |
4496732 |
T |
|
| Q |
398 |
atttcaaagaggatatggaacaaatgaag |
426 |
Q |
| |
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| T |
4496733 |
atttcaaagaggatatggaacgaatgaag |
4496761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 4400302 - 4399900
Alignment:
| Q |
1 |
tttgttgcaattaaaactcatttagtcactgcaatcagctagttaggaccatcaaatggagattcaataatatgcattctgactctagtgaatcggattc |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||| ||| ||| |||| |||||||| | |||| |
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| T |
4400302 |
tttgttgcaattgaaactcatttagtcactgcagtcagttagttaggaccatcaaatggagattcaacaatttgctttcagactttagtgaatagcattc |
4400203 |
T |
|
| Q |
101 |
aaaacgcaaacatcgagtttgagtcatctgtttttcatataactgtttcattttgctagctgcagtgactgtgtgatttttaaaccatggcaaatccata |
200 |
Q |
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||||||||| | ||||||||||| ||||||||||||||||| |||||| ||||| | |||||||||||| |||||||||||||| | | |||||||| |
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| T |
4400202 |
aaaacgcaagttttgagtttgagtcgtctgtttttcatataacagtttcaatttgcgaactgcagtgactgcgtgatttttaaacc-tagacaatccata |
4400104 |
T |
|
| Q |
201 |
tcatatttctccatcactgactgtattctgttaattaaatagaagagaccattgaaatccattacatatatgtgactgcatgattagttttactcatgct |
300 |
Q |
| |
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| || |||||||||||| || || ||| ||||||||| | ||||||||||| ||||||||| ||| ||||||| | ||||||||||||||||| || |
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| T |
4400103 |
taatctttctccatcaccga--gtcttcaattaattaaa-aaaagagaccatttaaatccattttatacatgtgaccacgtgattagttttactcatact |
4400007 |
T |
|
| Q |
301 |
tatgttaacttcatttgccaaaggatggaagcccttgcttttacagtcttggaaaagttgagctctgcagcttacaaagagctcgaaatcatttggaatt |
400 |
Q |
| |
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| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| || ||||| |||||||| |
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| T |
4400006 |
tgtgttaacttcatttgccaaaggatggaagaccttgctgttacagtcttggaaaagttgagctctgcagcttacaaagaccttcaaatcttttggaatc |
4399907 |
T |
|
| Q |
401 |
tcaaaga |
407 |
Q |
| |
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||||||| |
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| T |
4399906 |
tcaaaga |
4399900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 167 - 426
Target Start/End: Original strand, 4527751 - 4528012
Alignment:
| Q |
167 |
gactgtgtgatttttaaaccatggcaaatccatatcatatttctccatcactgactgtattctgttaattaaatagaagagaccattgaaatccatta-- |
264 |
Q |
| |
|
||||||||||||||||||| || ||||||||||| || ||||||||||||||| ||||||| ||||||||| |||||| |||||| |||||||||| |
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| T |
4527751 |
gactgtgtgatttttaaactatatcaaatccatataatctttctccatcactga--gtattctattaattaaaaagaagaaaccatttaaatccattata |
4527848 |
T |
|
| Q |
265 |
--catatatgtgactgcatgattagttttactcatgcttatgttaacttcatttgccaaaggatggaagcccttgcttttacagtcttggaaaagttgag |
362 |
Q |
| |
|
||| | ||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4527849 |
cacatgtttgtgaatgcgtgattagttttactcatgcttgtgttaacttcatttgccaaaggatggaagcccttgctgttacagtcttggaaaagttgag |
4527948 |
T |
|
| Q |
363 |
ctctgcagcttacaaagagctcgaaatcatttggaatttcaaagaggatatggaacaaatgaag |
426 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||| ||||||||||||| |||| ||||||| |
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| T |
4527949 |
ttctgcagcttacaaagagcttgaaatcatttggaatctcaaagaggatatcgaacgaatgaag |
4528012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 282 - 426
Target Start/End: Original strand, 4517677 - 4517821
Alignment:
| Q |
282 |
gattagttttactcatgcttatgttaacttcatttgccaaaggatggaagcccttgcttttacagtcttggaaaagttgagctctgcagcttacaaagag |
381 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
4517677 |
gattagttttactcatgcttttgttaacttcatttgccaaaggatggaagcccttgctgttacaatcttggaaaagttgagctctgcagcttacaaagag |
4517776 |
T |
|
| Q |
382 |
ctcgaaatcatttggaatttcaaagaggatatggaacaaatgaag |
426 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
4517777 |
ctcggaatcatttggaatttcaaagaggatatggaacgaatgaag |
4517821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 4527550 - 4527731
Alignment:
| Q |
1 |
tttgttgcaattaaaactcatttagtcactgcaatcagctagttaggaccatcaaatggagattcaat-aatatgcatt---ctgactctagtgaatcgg |
96 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||| ||||||||| |||||||||||| ||| |||||| ||||||||||||||| | |
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| T |
4527550 |
tttgttgcaattaaaactcatgtagtcactgcagtcagctaattaggaccag---atggagattcaaacaatttgcattattctgactctagtgaatatg |
4527646 |
T |
|
| Q |
97 |
attcaaaacgcaaacatcgagtttgagtcatctgtttttcatataactgtttcattttgctagctgcagtgactgtgtgattttt |
181 |
Q |
| |
|
|||||||| | |||| | ||||||||| ||||||||||| ||| || ||||||||||| || |||||||||||||||||||||| |
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|
| T |
4527647 |
attcaaaatgtaaactttgagtttgagacatctgtttttgatacaatggtttcattttgttaactgcagtgactgtgtgattttt |
4527731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 5e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 282 - 426
Target Start/End: Complemental strand, 18035852 - 18035708
Alignment:
| Q |
282 |
gattagttttactcatgcttatgttaacttcatttgccaaaggatggaagcccttgcttttacagtcttggaaaagttgagctctgcagcttacaaagag |
381 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18035852 |
gattagttttactcatgcttttgttaacttcatttgccaaaggatggaagcccttgctgttacagtcttggaaaagttgagctctgcagcttacaaagag |
18035753 |
T |
|
| Q |
382 |
ctcgaaatcatttggaatttcaaagaggatatggaacaaatgaag |
426 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
18035752 |
ctcgaaatcatttggaatttcaaagaggatatggaacgaatgaag |
18035708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 126
Target Start/End: Original strand, 46511088 - 46511162
Alignment:
| Q |
51 |
atcaaatggagattcaataatatgcattctgactctagtgaatcggattcaaaacgcaaacatcgagtttgagtca |
126 |
Q |
| |
|
|||| |||||||||||| ||| ||||| |||||| | |||||| |||||||||||||||| || |||||||||||| |
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|
| T |
46511088 |
atcagatggagattcaacaatttgcatcctgacttt-gtgaataggattcaaaacgcaaaaattgagtttgagtca |
46511162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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