View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7976_low_6 (Length: 382)
Name: NF7976_low_6
Description: NF7976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7976_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 7e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 179 - 361
Target Start/End: Complemental strand, 31583950 - 31583768
Alignment:
| Q |
179 |
catcattcaacatcaaattagtaaaatctatgtttaggtaatcctaacttatttctatgaaaatccttcgtaataacatttggaagattgccctaccgag |
278 |
Q |
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| T |
31583950 |
catcattcaacatcaaattagtaaaatctatgtttaggtaatcctaacttatttctatgaaaatccttcgtaataacatttggaagattgccctaccgag |
31583851 |
T |
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| Q |
279 |
tgaaactaataacaaataaaccagtattagcaattttatgagtacaacaatttcctttcctaaaaatattgaagatcatgtag |
361 |
Q |
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| T |
31583850 |
tgaaactaataacaaataaaccagtattagcaattttatgagtacaacaatttcctttcctaaaaatattgaagatcatgtag |
31583768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 31584110 - 31584007
Alignment:
| Q |
19 |
atcattaataaaagtaaaaaatgcacaaacttagatgaactaaaccaaacccaaagcaatacacaaggtgaatgctaatctctacttcattagaaacctt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31584110 |
atcattaataaaagtaaaaaatgcacaaacttagatgaactaaaccaaacccaaagcaatacacaaggtgaatgctaatctctacttcattagaaacctt |
31584011 |
T |
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| Q |
119 |
cccc |
122 |
Q |
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|||| |
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| T |
31584010 |
cccc |
31584007 |
T |
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