View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7976_low_7 (Length: 369)
Name: NF7976_low_7
Description: NF7976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7976_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 14431028 - 14431392
Alignment:
| Q |
1 |
ccaggtggaggataagccatcaccggttcatgttcgttttttcccttcaccggttcatgtttcgccgttgttttcatggccggagcttggactttttcac |
100 |
Q |
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| T |
14431028 |
ccaggtggaggataagccatcaccggttcatgttcgttttttcccttcaccggttcatgtttcgacgttgttttcatcgccggagcttggactttttcgc |
14431127 |
T |
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| Q |
101 |
cgaatttgtaagagaggtttaagcttcctttagctttccctgaagatgttctaacctgataattaacctgccggaaagaatctccggaggggttatcaag |
200 |
Q |
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| T |
14431128 |
cgaatttgtaagagaggtttaagtttcctttagctttccctgaagatgttctaacctgataattaacctgccggaaagaatctccggaggggttatcaag |
14431227 |
T |
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| Q |
201 |
aagctccttgagagggatatgaaccttgccgatcaaggtatcgccggcaacggtacgatcggagatgagtttgacctcgagagagagacgattctggtta |
300 |
Q |
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| T |
14431228 |
aagctccttgagagggatatgaaccttgccgatcaaggtatcgccggcaacggtacgatcggagatgagtttgacctcgagagagagacgattctggtta |
14431327 |
T |
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| Q |
301 |
gcgagagaatcgttgatggtgaatttgacggggaagttccatgtagggcttgttccaccgtcacg |
365 |
Q |
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| T |
14431328 |
gcgagagaatcgttgatggtgaatttgacggggaagttccatgtagggcttgttccaccgtcacg |
14431392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 261 - 357
Target Start/End: Complemental strand, 15251446 - 15251350
Alignment:
| Q |
261 |
ggagatgagtttgacctcgagagagagacgattctggttagcgagagaatcgttgatggtgaatttgacggggaagttccatgtagggcttgttcca |
357 |
Q |
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| T |
15251446 |
ggagaggagtttgacttcgagagagaggcaattctggttggcgagagattcattgacgatgaacttgacggggatgttccatgtggggtttcttcca |
15251350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 357
Target Start/End: Complemental strand, 15275594 - 15275493
Alignment:
| Q |
256 |
cgatcggagatgagtttgacctcgagagagagacgattctggttagcgagagaatcgttgatggtgaatttgacggggaagttccatgtagggcttgttc |
355 |
Q |
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|||| ||||||||||||||| || |||||||||||||| | || ||||||||| ||||||| | ||| ||||| |||| ||||||||| ||| || ||| |
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| T |
15275594 |
cgataggagatgagtttgacttcaagagagagacgattatagtaagcgagagattcgttgacagcgaacttgaccgggatgttccatgtggggtttcttc |
15275495 |
T |
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| Q |
356 |
ca |
357 |
Q |
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|| |
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| T |
15275494 |
ca |
15275493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 346
Target Start/End: Complemental strand, 15263959 - 15263869
Alignment:
| Q |
256 |
cgatcggagatgagtttgacctcgagagagagacgattctggttagcgagagaatcgttgatggtgaatttgacggggaagttccatgtag |
346 |
Q |
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|||| ||| |||||||||| ||||||||||||||||| |||| ||||||| || |||| || ||| |||| ||||| ||||||||||| |
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| T |
15263959 |
cgataggaaatgagtttgatttcgagagagagacgattatggtagacgagagattccttgacggcgaacttgatggggatgttccatgtag |
15263869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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