View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7976_low_9 (Length: 349)

Name: NF7976_low_9
Description: NF7976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7976_low_9
NF7976_low_9
[»] chr2 (1 HSPs)
chr2 (1-333)||(35602854-35603177)


Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 35603177 - 35602854
Alignment:
Q  1 ttggcgtttagcccaccaatgcttgcagactcgtgccaaactcatcacccacatatgccatgtgacgatatttgtgtatattgtgagaaacttctggaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| || |||||||||| ||||||    
T  35603177 ttggcgtttagcccaccaatgcttgcagactcgtgccaaactcatcacccacatatgccatgtgacaatgtttgtgtatcttctgagaaacttgtggaaa 35603078  T
Q  101 cccatatgcacactttctttctttgtcataaggctttgaattgttttgtaaaaatgggattgataatatcgttcggtagctacttctcagtgttaacatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35603077 cccatatgcacactttctttctttgtcataaggctttgaattgttttgtaaaaatgggattgataatatcgttcggtagctacttctcagtgttaacatt 35602978  T
Q  201 ttctctgatatgctttttgatttgcttgataggttatcatcccaacaacaaccattgactgtgatgatttcatggagtttgtggaagagtcgaaacacta 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||         |||||||||    
T  35602977 ttctctgatatgctttttgatttgcttgataggttatcatcccaaccacaaccattgactgtgatgatttcatggagtttgt---------gaaacacta 35602887  T
Q  301 agttgtgagaagcctataacaccactcccatgt 333  Q
    ||||||||||||||| |||||||||||||||||    
T  35602886 agttgtgagaagcctctaacaccactcccatgt 35602854  T

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