View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7977_low_3 (Length: 207)

Name: NF7977_low_3
Description: NF7977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7977_low_3
NF7977_low_3
[»] chr5 (13 HSPs)
chr5 (17-185)||(37532485-37532653)
chr5 (17-189)||(37593585-37593757)
chr5 (17-189)||(37695976-37696148)
chr5 (17-189)||(37702064-37702236)
chr5 (20-189)||(37401608-37401777)
chr5 (20-189)||(37639127-37639296)
chr5 (20-189)||(37823285-37823454)
chr5 (20-189)||(37710885-37711054)
chr5 (17-189)||(37393484-37393656)
chr5 (17-156)||(37413772-37413911)
chr5 (18-189)||(37382934-37383105)
chr5 (17-148)||(37435132-37435263)
chr5 (78-147)||(37428475-37428543)
[»] chr3 (1 HSPs)
chr3 (17-189)||(14552753-14552925)
[»] chr4 (3 HSPs)
chr4 (17-189)||(16843603-16843775)
chr4 (26-146)||(24218347-24218467)
chr4 (17-147)||(16846271-16846400)


Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 17 - 185
Target Start/End: Complemental strand, 37532653 - 37532485
Alignment:
Q  17 atagaggacacatttccaaattgtctagaaactctacaagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagca 116  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37532653 atagaggacacatttccaaattggctagaaactctacaagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagca 37532554  T
Q  117 ccaagcattcatttcctaagttgagaattttttatgtttgtaacaacaattttagtgggcccttgccaa 185  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  37532553 ccaagcattcatttcctaagttgagaatttttgatgtttctaacaacaattttagtgggcccttgccaa 37532485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 37593757 - 37593585
Alignment:
Q  17 atagaggacacatttccaaattgtctagaaactctacaagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagca 116  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37593757 atagaggacacatttccaaattggctagaaactctacaagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagca 37593658  T
Q  117 ccaagcattcatttcctaagttgagaattttttatgtttgtaacaacaattttagtgggcccttgccaacatc 189  Q
    |||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||    
T  37593657 ccaagcattcatttcctaagttgagaatttttgatgtttctatcaacaattttagtgggcccttgccaacatc 37593585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 37696148 - 37695976
Alignment:
Q  17 atagaggacacatttccaaattgtctagaaactctacaagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagca 116  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37696148 atagaggacacatttccaaattggctagaaactctacaagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagca 37696049  T
Q  117 ccaagcattcatttcctaagttgagaattttttatgtttgtaacaacaattttagtgggcccttgccaacatc 189  Q
    |||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||    
T  37696048 ccaagcattcatttcctaagttgagaatttttgatgtttctatcaacaattttagtgggcccttgccaacatc 37695976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 37702236 - 37702064
Alignment:
Q  17 atagaggacacatttccaaattgtctagaaactctacaagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagca 116  Q
    |||||||| |||||||| ||||| ||||||||| ||| ||||||||| || || || |||||||||||| ||||||||||||||||||||||||||||||    
T  37702236 atagaggatacatttcccaattggctagaaactttaccagagttacaggtgctgagtttacgatcaaatcatcttcatggtgcaatcacttgttctagca 37702137  T
Q  117 ccaagcattcatttcctaagttgagaattttttatgtttgtaacaacaattttagtgggcccttgccaacatc 189  Q
    |||||||||||||||||||||||||||||||| |||  | |||||||||||||||||| ||||||||||||||    
T  37702136 ccaagcattcatttcctaagttgagaatttttgatgcctctaacaacaattttagtggccccttgccaacatc 37702064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 20 - 189
Target Start/End: Original strand, 37401608 - 37401777
Alignment:
Q  20 gaggacacatttccaaattgtctagaaactctacaagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagcacca 119  Q
    ||||| ||||||||  |||| ||||||||||||| ||||||||| ||  |||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  37401608 gaggatacatttcctgattggctagaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatcacctgttctagcacca 37401707  T
Q  120 agcattcatttcctaagttgagaattttttatgtttgtaacaacaattttagtgggcccttgccaacatc 189  Q
    ||||| ||||||| ||||||||||||||| |||| | |||||||||||||||||||||||||||||||||    
T  37401708 agcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgccaacatc 37401777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 20 - 189
Target Start/End: Complemental strand, 37639296 - 37639127
Alignment:
Q  20 gaggacacatttccaaattgtctagaaactctacaagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagcacca 119  Q
    ||||| ||||||||  |||| ||||||||||||| ||||||||| ||  |||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  37639296 gaggatacatttcctgattggctagaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatcacctgttctagcacca 37639197  T
Q  120 agcattcatttcctaagttgagaattttttatgtttgtaacaacaattttagtgggcccttgccaacatc 189  Q
    ||||| ||||||| ||||||||||||||| |||| | |||||||||||||||||||||||||||||||||    
T  37639196 agcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgccaacatc 37639127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 20 - 189
Target Start/End: Complemental strand, 37823454 - 37823285
Alignment:
Q  20 gaggacacatttccaaattgtctagaaactctacaagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagcacca 119  Q
    ||||| ||||||||  |||| ||||||||||||| ||||||||| ||  |||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  37823454 gaggatacatttcctgattggctagaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatcacctgttctagcacca 37823355  T
Q  120 agcattcatttcctaagttgagaattttttatgtttgtaacaacaattttagtgggcccttgccaacatc 189  Q
    ||||| ||||||| ||||||||||||||| |||| | |||||||||||||||||||||||||||||||||    
T  37823354 agcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgccaacatc 37823285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 20 - 189
Target Start/End: Complemental strand, 37711054 - 37710885
Alignment:
Q  20 gaggacacatttccaaattgtctagaaactctacaagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagcacca 119  Q
    ||||| ||||||||  |||| ||||||||||||| ||||||||| ||  |||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  37711054 gaggatacatttcctgattggctagaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatcacctgttctagcacca 37710955  T
Q  120 agcattcatttcctaagttgagaattttttatgtttgtaacaacaattttagtgggcccttgccaacatc 189  Q
    ||||| ||||||| ||||||||||||||| |||| | |||||||||||||||||||||||||||| ||||    
T  37710954 agcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgccagcatc 37710885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 37393484 - 37393656
Alignment:
Q  17 atagaggacacatttccaaattgtctagaaactctacaagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagca 116  Q
    |||||||| || ||||| ||||| ||||||||||||||||||||||| || ||||| |||||||||||| ||||||||||  ||||||| ||||||||||    
T  37393484 atagaggatacttttcccaattggctagaaactctacaagagttacaggtgctaagtttacgatcaaatcatcttcatgggtcaatcacatgttctagca 37393583  T
Q  117 ccaagcattcatttcctaagttgagaattttttatgtttgtaacaacaattttagtgggcccttgccaacatc 189  Q
    |||||||| ||||||||||||||||||||| | |||| | ||  |||||||||||||| ||||||||||||||    
T  37393584 ccaagcatccatttcctaagttgagaatttatgatgtctctagtaacaattttagtggccccttgccaacatc 37393656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 17 - 156
Target Start/End: Original strand, 37413772 - 37413911
Alignment:
Q  17 atagaggacacatttccaaattgtctagaaactctacaagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagca 116  Q
    |||||||| |||||||| ||||| ||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  37413772 atagaggatacatttcccaattggctagaaactctacaagagttacaggtgctaagtttacgatcaaataatcttcatggtgcaatcacctgttctagca 37413871  T
Q  117 ccaagcattcatttcctaagttgagaattttttatgtttg 156  Q
    | |||||| ||||||| ||||||||||| |||||||||||    
T  37413872 caaagcatacatttcccaagttgagaatattttatgtttg 37413911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 37382934 - 37383105
Alignment:
Q  18 tagaggacacatttccaaattgtctagaaactctacaagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagcac 117  Q
    ||||||| || ||||| ||||| || |||||||||||||| ||||| || || || ||| |||||||||| |||||||| |||||||| || ||||||||    
T  37382934 tagaggatacttttcccaattggcttgaaactctacaagaattacaggtgctcagtttaagatcaaataaacttcatggcgcaatcacatgctctagcac 37383033  T
Q  118 caagcattcatttcctaagttgagaattttttatgtttgtaacaacaattttagtgggcccttgccaacatc 189  Q
    ||| ||| ||||||| ||||||||||||||| |||| | |||||||||||||| ||||||||||||||||||    
T  37383034 caaacatccatttcccaagttgagaatttttgatgtctctaacaacaattttattgggcccttgccaacatc 37383105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 17 - 148
Target Start/End: Complemental strand, 37435263 - 37435132
Alignment:
Q  17 atagaggacacatttccaaattgtctagaaactctacaagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagca 116  Q
    |||||||| |||||||| ||||| ||||||||||||||||||||||| || || || ||| |||||||||| ||| ||||| ||||||| ||||||| ||    
T  37435263 atagaggatacatttcccaattggctagaaactctacaagagttacaggtactcagtttaagatcaaataaacttaatggttcaatcacctgttctaaca 37435164  T
Q  117 ccaagcattcatttcctaagttgagaattttt 148  Q
    |||| ||| | ||| ||||||| |||||||||    
T  37435163 ccaaccatcctttttctaagttaagaattttt 37435132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 147
Target Start/End: Complemental strand, 37428543 - 37428475
Alignment:
Q  78 gatcaaataatcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgagaatttt 147  Q
    |||||||||| || |||||| |||||||||||||||  ||||| ||| || |||| ||||||||||||||    
T  37428543 gatcaaataaactgcatggtacaatcacttgttctatgaccaaacatcca-ttcccaagttgagaatttt 37428475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 14552925 - 14552753
Alignment:
Q  17 atagaggacacatttccaaattgtctagaaactctacaagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagca 116  Q
    |||||||| |||||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||||| ||||||| || |||||||| ||||||||||    
T  14552925 atagaggatacatttcccaattggctagaaactctacaagagttacaagtgctaagtttacgatcaaatcatcttcacggagcaatcacctgttctagca 14552826  T
Q  117 ccaagcattcatttcctaagttgagaattttttatgtttgtaacaacaattttagtgggcccttgccaacatc 189  Q
     ||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||  |||||||||||||    
T  14552825 tcaagcattcatttcctaagttgagaatttttgatgtctctaacaacaattttagtggcaccttgccaacatc 14552753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 16843603 - 16843775
Alignment:
Q  17 atagaggacacatttccaaattgtctagaaactctacaagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagca 116  Q
    |||||||| |||||||| | ||| || |||||||||||||||||||| || ||    |||||||| |||||||||||||| | |||||||||||||||||    
T  16843603 atagaggatacatttcccagttggcttgaaactctacaagagttacaggtactcgttttacgatctaataatcttcatggagtaatcacttgttctagca 16843702  T
Q  117 ccaagcattcatttcctaagttgagaattttttatgtttgtaacaacaattttagtgggcccttgccaacatc 189  Q
    |||||||| ||||||||||||||||||||||| |||| | ||||||||||||||||||  |||||||||||||    
T  16843703 ccaagcatccatttcctaagttgagaatttttgatgtctctaacaacaattttagtggcaccttgccaacatc 16843775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 26 - 146
Target Start/End: Original strand, 24218347 - 24218467
Alignment:
Q  26 acatttccaaattgtctagaaactctacaagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagcaccaagcatt 125  Q
    |||||||| |||||  |||||  ||| ||||||||||| || || || |||||||||||| |||||||||||| ||||||||||||||||||||| || |    
T  24218347 acatttcccaattggttagaagttctgcaagagttacaggtactcagtttacgatcaaatcatcttcatggtggaatcacttgttctagcaccaaacaat 24218446  T
Q  126 catttcctaagttgagaattt 146  Q
    ||||||| ||| |||||||||    
T  24218447 catttccgaagatgagaattt 24218467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 16846271 - 16846400
Alignment:
Q  17 atagaggacacatttccaaattgtctagaaactctacaagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagca 116  Q
    |||||||| |||||||| | ||| || |||||||||||||||||||| || || || ||| | |||||||| ||| ||||| ||||||| ||||||||||    
T  16846271 atagaggatacatttcccagttggcttgaaactctacaagagttacatgtactcagtttaaggtcaaataaactttatggttcaatcacatgttctagca 16846370  T
Q  117 ccaagcattcatttcctaagttgagaatttt 147  Q
    |||||||| ||||||| || |||||||||||    
T  16846371 ccaagcatccatttcc-aaattgagaatttt 16846400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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