View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7978_high_10 (Length: 239)
Name: NF7978_high_10
Description: NF7978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7978_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 2360654 - 2360887
Alignment:
| Q |
1 |
caactaacatctacaaatgaatatatttcatatcctgtaaacaagaggtatatatttagcactccctaaatcaaataatcaattttagattgcacttcga |
100 |
Q |
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| T |
2360654 |
caactaacatctacaaatgcatatatttcatgtcccgtaaataagaggtatatatttagcactccctaaatcaaataatcaatttcagattgtacttcga |
2360753 |
T |
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| Q |
101 |
aaaaagcatcatgtacaggaatagaagtattagta---------taaca--agatgtgatttatatataatcaatcatatcaagtatttacattagattc |
189 |
Q |
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| T |
2360754 |
aaaaagcatcaagtgcaggagtagaagtattagtaaccaactatttacattagatgtgatttatatataatcaatcatatcaagtatttacattagattc |
2360853 |
T |
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| Q |
190 |
ataaccaactacacctaatctcacacaaacatat |
223 |
Q |
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| T |
2360854 |
ataaccaagtacacctaatctcacacaaacatat |
2360887 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 18435849 - 18435898
Alignment:
| Q |
147 |
gatttatatataatcaatcatatcaagtatttacattagattcataacca |
196 |
Q |
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| T |
18435849 |
gatttatttatatccaatcagatcaagtatttacattagatccataacca |
18435898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 212
Target Start/End: Complemental strand, 5343193 - 5343129
Alignment:
| Q |
148 |
atttatatataatcaatcatatcaagtatttacattagattcataaccaactacacctaatctca |
212 |
Q |
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| T |
5343193 |
atttatatataactagtcacaccaagtatttacatcaaatttctaaccaactacacctaatctca |
5343129 |
T |
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