View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7978_high_3 (Length: 340)
Name: NF7978_high_3
Description: NF7978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7978_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 325
Target Start/End: Complemental strand, 44361086 - 44360779
Alignment:
| Q |
18 |
acatatagcttaatttgcagtgtcacataggagtattattaagataactaaagaggtatgacaaattaaattagtggagatggaaaaatgggtgtgtttg |
117 |
Q |
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| T |
44361086 |
acatatagcttaatttgcagtgtcaaataggagtattattaagataactaaagaggtgtgacaaattaaattagtggagatggaaaaatgggtgtgtttg |
44360987 |
T |
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| Q |
118 |
atgatgatgttggtagcaatattggaattaagttttggagtcaaaggtgcagaagaggtaacatatgatggaagatcccttatcatcaatggacaaagaa |
217 |
Q |
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| T |
44360986 |
atgatgatgttggtagcaatattggaattaagttttggagtcaaaggtgcagaagaggtaacatatgatggaagatctcttatcatcaatggacaaagaa |
44360887 |
T |
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| Q |
218 |
atattctcttctctggttctattcattacccccgtagcacccctcaggtaatcaaatctaattacaatatacctatattcatattattgcatctctcaat |
317 |
Q |
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| T |
44360886 |
atattctcttctctggttctattcattacccccgtagcacccctcaggtaatcaaatctacgtacaatatacctatattcatattattgcatctctcaat |
44360787 |
T |
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| Q |
318 |
agtctctg |
325 |
Q |
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|||||||| |
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| T |
44360786 |
agtctctg |
44360779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 267
Target Start/End: Original strand, 40097571 - 40097615
Alignment:
| Q |
223 |
ctcttctctggttctattcattacccccgtagcacccctcaggta |
267 |
Q |
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| T |
40097571 |
ctcttctctggttcaattcattatcctcgtagcactcctcaggta |
40097615 |
T |
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