View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7978_high_4 (Length: 331)

Name: NF7978_high_4
Description: NF7978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7978_high_4
NF7978_high_4
[»] chr1 (2 HSPs)
chr1 (6-314)||(5565209-5565517)
chr1 (25-79)||(51746486-51746540)
[»] chr4 (5 HSPs)
chr4 (25-109)||(14981533-14981617)
chr4 (25-79)||(3087144-3087198)
chr4 (25-79)||(10225261-10225315)
chr4 (25-79)||(20168970-20169024)
chr4 (25-75)||(32700241-32700291)
[»] chr6 (3 HSPs)
chr6 (25-79)||(13052612-13052666)
chr6 (25-79)||(22028031-22028085)
chr6 (25-79)||(26338331-26338385)
[»] chr5 (1 HSPs)
chr5 (25-79)||(30666427-30666481)
[»] chr3 (1 HSPs)
chr3 (25-79)||(26526970-26527024)
[»] chr2 (5 HSPs)
chr2 (25-79)||(1735421-1735475)
chr2 (25-79)||(6000717-6000771)
chr2 (25-79)||(18813681-18813735)
chr2 (25-79)||(34508790-34508844)
chr2 (25-79)||(44338182-44338236)
[»] chr8 (1 HSPs)
chr8 (31-79)||(31303795-31303843)


Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 6 - 314
Target Start/End: Original strand, 5565209 - 5565517
Alignment:
Q  6 tggtgggtagataatactgtgttgtggggtgtcgagaaattcatacattatagagacatgtgtgttttgtgttgcgttggttgtcgtttggttggtaggt 105  Q
    |||||| | ||||||| ||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  5565209 tggtggttggataatattgtgttgtggggtatcgagaaattcatacattatagaaccatgtgtgttttgtgttgcgttggttgtcgtttggttggtaggt 5565308  T
Q  106 ggttatgagtaaggatctggtattgttgaaagaaattattgtgatcaggagtcatgcggctctggtttcggttggttgttgtaattttcacattatggct 205  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  5565309 ggttgtgagtaaggatctggtattgttgaaagaaattcttgtgatcaggagtcatgcggctctggattcggttggttgttgtaattttcacattatggct 5565408  T
Q  206 atggttctagctccgactccgaatttgaatgtggagtatgcgatcaaattgaagtttgtataatatagttacatggctatgatttttgtagaaatctgaa 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5565409 atggttctagctccgactccgaatttgaatgtggagtatgcgatcaaattgaagtttgtataatatagttacatggctatgatttttgtagaaatctgaa 5565508  T
Q  306 tatgttttt 314  Q
     ||||||||    
T  5565509 catgttttt 5565517  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 51746540 - 51746486
Alignment:
Q  25 tgttgtggggtgtcgagaaattcatacattatagagacatgtgtgttttgtgttg 79  Q
    ||||| ||||||||||||||||||||||||| |||  ||||  ||||||||||||    
T  51746540 tgttggggggtgtcgagaaattcatacattacagaaccatgaatgttttgtgttg 51746486  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 14981533 - 14981617
Alignment:
Q  25 tgttgtggggtgtcgagaaattcatacattatagagacatgtgtgttttgtgttgcgttggttgtcgtttggttggtaggtggtt 109  Q
    |||||||||||||||||||||||||||||||||||  ||||  |||||||||||| | ||||||| |||||||| ||||||||||    
T  14981533 tgttgtggggtgtcgagaaattcatacattatagaaccatgaatgttttgtgttgtggtggttgttgtttggtttgtaggtggtt 14981617  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 3087198 - 3087144
Alignment:
Q  25 tgttgtggggtgtcgagaaattcatacattatagagacatgtgtgttttgtgttg 79  Q
    ||||| ||||||||||||||||||||||||| |||  ||||| ||||||||||||    
T  3087198 tgttggggggtgtcgagaaattcatacattacagaaccatgtatgttttgtgttg 3087144  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 10225261 - 10225315
Alignment:
Q  25 tgttgtggggtgtcgagaaattcatacattatagagacatgtgtgttttgtgttg 79  Q
    ||||| ||||||||||||||||||||||||| |||  ||||  ||||||||||||    
T  10225261 tgttggggggtgtcgagaaattcatacattacagaaccatgaatgttttgtgttg 10225315  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 20168970 - 20169024
Alignment:
Q  25 tgttgtggggtgtcgagaaattcatacattatagagacatgtgtgttttgtgttg 79  Q
    ||||| ||||||||||||||||||||||||| |||  ||||  ||||||||||||    
T  20168970 tgttggggggtgtcgagaaattcatacattacagaaccatgaatgttttgtgttg 20169024  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 32700291 - 32700241
Alignment:
Q  25 tgttgtggggtgtcgagaaattcatacattatagagacatgtgtgttttgt 75  Q
    |||||||||||||| ||||| ||||||||||||||  |||| |||||||||    
T  32700291 tgttgtggggtgtcaagaaaatcatacattatagaaccatgagtgttttgt 32700241  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 13052666 - 13052612
Alignment:
Q  25 tgttgtggggtgtcgagaaattcatacattatagagacatgtgtgttttgtgttg 79  Q
    ||||| ||| ||||||||||||||||||||| |||  ||||| ||||||||||||    
T  13052666 tgttgggggttgtcgagaaattcatacattacagaaccatgtatgttttgtgttg 13052612  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 22028085 - 22028031
Alignment:
Q  25 tgttgtggggtgtcgagaaattcatacattatagagacatgtgtgttttgtgttg 79  Q
    ||||| ||||||||||||||||||||||||| |||  ||||  ||||||||||||    
T  22028085 tgttggggggtgtcgagaaattcatacattacagaaccatgaatgttttgtgttg 22028031  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 26338385 - 26338331
Alignment:
Q  25 tgttgtggggtgtcgagaaattcatacattatagagacatgtgtgttttgtgttg 79  Q
    ||||| ||||||||||||||||||||||||| |||  ||||  ||||||||||||    
T  26338385 tgttggggggtgtcgagaaattcatacattacagaaccatgaatgttttgtgttg 26338331  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 30666481 - 30666427
Alignment:
Q  25 tgttgtggggtgtcgagaaattcatacattatagagacatgtgtgttttgtgttg 79  Q
    |||||||||||||| ||||| ||||||||||||||  | || |||||||||||||    
T  30666481 tgttgtggggtgtcaagaaaatcatacattatagaaccttgagtgttttgtgttg 30666427  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 26527024 - 26526970
Alignment:
Q  25 tgttgtggggtgtcgagaaattcatacattatagagacatgtgtgttttgtgttg 79  Q
    ||||| ||||||||||||||||||||||||| |||  ||||  ||||||||||||    
T  26527024 tgttggggggtgtcgagaaattcatacattacagaaccatgaatgttttgtgttg 26526970  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 1735421 - 1735475
Alignment:
Q  25 tgttgtggggtgtcgagaaattcatacattatagagacatgtgtgttttgtgttg 79  Q
    ||||| ||||||||||||||||||||||||| |||  ||||  ||||||||||||    
T  1735421 tgttggggggtgtcgagaaattcatacattacagaaccatgaatgttttgtgttg 1735475  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 6000717 - 6000771
Alignment:
Q  25 tgttgtggggtgtcgagaaattcatacattatagagacatgtgtgttttgtgttg 79  Q
    |||||||||||||| ||||| ||||||||||||||  | || |||||||||||||    
T  6000717 tgttgtggggtgtcaagaaaatcatacattatagaaccttgagtgttttgtgttg 6000771  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 18813735 - 18813681
Alignment:
Q  25 tgttgtggggtgtcgagaaattcatacattatagagacatgtgtgttttgtgttg 79  Q
    ||||| ||||||||||||||||||||||||| |||  ||||  ||||||||||||    
T  18813735 tgttggggggtgtcgagaaattcatacattacagaaccatgaatgttttgtgttg 18813681  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 34508844 - 34508790
Alignment:
Q  25 tgttgtggggtgtcgagaaattcatacattatagagacatgtgtgttttgtgttg 79  Q
    ||||| ||||||||||||||||||||||||| |||  ||||  ||||||||||||    
T  34508844 tgttggggggtgtcgagaaattcatacattacagaaccatgaatgttttgtgttg 34508790  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 44338236 - 44338182
Alignment:
Q  25 tgttgtggggtgtcgagaaattcatacattatagagacatgtgtgttttgtgttg 79  Q
    ||||| ||||||||||||||||||||||||| |||  ||||  ||||||||||||    
T  44338236 tgttggggggtgtcgagaaattcatacattacagaaccatgaatgttttgtgttg 44338182  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 31303843 - 31303795
Alignment:
Q  31 ggggtgtcgagaaattcatacattatagagacatgtgtgttttgtgttg 79  Q
    ||||||||||||||||||||||||| |||  ||||  ||||||||||||    
T  31303843 ggggtgtcgagaaattcatacattacagaaccatgaatgttttgtgttg 31303795  T

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