View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7978_high_6 (Length: 296)
Name: NF7978_high_6
Description: NF7978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7978_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 30350149 - 30349872
Alignment:
| Q |
1 |
ttttctctccctctctcactctcttttatttcaacacttagactcaatcaagtccttgctactcaagagaatggcttctccaactcaaaatttgaggatt |
100 |
Q |
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| T |
30350149 |
ttttctctccctctctcactctcttttatttcaacacttagactcaatcaagtccttgctactcaagagaatggcttctccaactcaaaatttgaggatt |
30350050 |
T |
|
| Q |
101 |
caaaaggctacaatagtgttactcattatatgtatttcattttcttcttcaaccgaagaaatcacaataacatctccaaagaagttagactatccggtgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
30350049 |
caaaaggctacaatagtgttactcattatatgtatttcattttcttcttcaaccgaagaaatcataataacatctccaaagaagttagactttccggtgg |
30349950 |
T |
|
| Q |
201 |
ttgttccgccaccagaatacaccgaaatcaagtgcggatcatgtccttgtggacaaacatgtggcgaccaatctcctc |
278 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30349949 |
ttgttccgccaccagagtacaccgaaatcaagtgcggatcatgtccttgtggacaaacatgtggcgaccaatctcctc |
30349872 |
T |
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