View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7978_low_1 (Length: 595)
Name: NF7978_low_1
Description: NF7978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7978_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 320 - 576
Target Start/End: Original strand, 1196076 - 1196332
Alignment:
| Q |
320 |
caacgaggtgcaggcatacctcaattcgaaggtagtaattctcggacgattgaagacttggaaagattgattcaaggttatattcaactatgtctcgagc |
419 |
Q |
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| T |
1196076 |
caacgaggtgcaggcatacctcaattcgaaggtagtaattctcggacgattgaagacttggaaagattgattcaaggttatattcaactatgtctcgagc |
1196175 |
T |
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| Q |
420 |
agcttcaagaagacctgaaagtagaaagggtgcccatgtcgttgctctgtaacgatttacaactgaagtattatgccctggagtccctgttcttccacat |
519 |
Q |
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| T |
1196176 |
agcttcaagaagacctgaaagtagaaagggtgcccatttcgttgctgtgtactgatttacaactgaagtattatgccctggagtccctgttcttccacat |
1196275 |
T |
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| Q |
520 |
cctaatgacaacaacacgaatttggtaggttcgtttggattcacaggtatgaaatca |
576 |
Q |
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| T |
1196276 |
cctaatgacaacaacacgaatttggtaggttcgtttggattcacaggtatgaaatca |
1196332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 22 - 267
Target Start/End: Original strand, 1195727 - 1195967
Alignment:
| Q |
22 |
ggtaaatggcacaaacccttctagagccttggcgtttgtatccagctcacttggtttttcgtgatgggtgaaagaagttacattcagaatcttaactcgt |
121 |
Q |
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| T |
1195727 |
ggtaaatggcacaaacccttgtagagcctcggcgtttgtatccagctcacttggtttttcgtgatgggtgaaagaagttacattcagaatcttaactcgt |
1195826 |
T |
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| Q |
122 |
tgttccaacaagtcctctcctgcctttataagtttttccatgttttctatggtagcattatcggcagtaagggttttatccaagctatactcctgcgcat |
221 |
Q |
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| T |
1195827 |
tgttccaacaagtcctctcctgcctttataagtttttccatgttttctatggtagcattatcagcagtaagggtttgatccaagctatactcctacacat |
1195926 |
T |
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| Q |
222 |
tatggacagttacgtttattaaagattaaaaataatgattttagat |
267 |
Q |
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| T |
1195927 |
tatggaca-----gtttattcaagattaaaaataatgattttagat |
1195967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 509 - 588
Target Start/End: Original strand, 1277097 - 1277176
Alignment:
| Q |
509 |
ttcttccacatcctaatgacaacaacacgaatttggtaggttcgtttggattcacaggtatgaaatcaggattcttctca |
588 |
Q |
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| T |
1277097 |
ttcttccacatcctaatgacaacaacacgattttggtaggttcgtttggattcacaggaatgaaattaggattcttctca |
1277176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 269 - 319
Target Start/End: Original strand, 1196006 - 1196056
Alignment:
| Q |
269 |
taaaaatagaagaagttatttggaactcattcgttataaattaattaaagg |
319 |
Q |
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| T |
1196006 |
taaaagtagaagaagttatttgaaactcattcgttataaattaattaaagg |
1196056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 336 - 405
Target Start/End: Original strand, 1253036 - 1253105
Alignment:
| Q |
336 |
tacctcaattcgaaggtagtaattctcggacgattgaagacttggaaagattgattcaaggttatattca |
405 |
Q |
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| T |
1253036 |
tacctcaattcgaaggtagtaattgtctgaagaccgatgacttggaaatattgattcaagatgatattca |
1253105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 176
Target Start/End: Original strand, 1241886 - 1241938
Alignment:
| Q |
124 |
ttccaacaagtcctctcctgcctttataagtttttccatgttttctatggtag |
176 |
Q |
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|||||| ||||||||||||||||||| |||||| |||| ||||||| |||||| |
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| T |
1241886 |
ttccaataagtcctctcctgcctttacaagtttgtccaggttttctttggtag |
1241938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 510 - 584
Target Start/End: Original strand, 1242517 - 1242591
Alignment:
| Q |
510 |
tcttccacatcctaatgacaacaacacgaatttggtaggttcgtttggattcacaggtatgaaatcaggattctt |
584 |
Q |
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|||||||||||||||||| ||||| | || ||||||||||| ||| |||||||| |||||||||| |||||| |
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| T |
1242517 |
tcttccacatcctaatgataacaagaggattttggtaggttgattttcattcacagaaatgaaatcagaattctt |
1242591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 510 - 584
Target Start/End: Original strand, 1253216 - 1253290
Alignment:
| Q |
510 |
tcttccacatcctaatgacaacaacacgaatttggtaggttcgtttggattcacaggtatgaaatcaggattctt |
584 |
Q |
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| T |
1253216 |
tcttccacatcctaatgataacaagaggattttggtaggttgattttcattcacagaaatgaaatcagaattctt |
1253290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 405
Target Start/End: Original strand, 1242337 - 1242406
Alignment:
| Q |
336 |
tacctcaattcgaaggtagtaattctcggacgattgaagacttggaaagattgattcaaggttatattca |
405 |
Q |
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| T |
1242337 |
tacctcaattcgaaggtagtaattgtctgaagaccggtgacttggaaatattgattcaagatgatattca |
1242406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 163
Target Start/End: Original strand, 1276696 - 1276749
Alignment:
| Q |
110 |
atcttaactcgttgttccaacaagtcctctcctgcctttataagtttttccatg |
163 |
Q |
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| T |
1276696 |
atcttaacaggttgtttcaacaagtcttctcctgcctttacaagtttttgcatg |
1276749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 1220269 - 1220321
Alignment:
| Q |
131 |
aagtcctctcctgcctttataagtttttccatgttttctatggtagcattatc |
183 |
Q |
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| T |
1220269 |
aagtcctttcctgcctgtatcagattttccatgctttctatggtaacattatc |
1220321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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