View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7978_low_10 (Length: 253)
Name: NF7978_low_10
Description: NF7978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7978_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 2360632 - 2360390
Alignment:
| Q |
1 |
caaacacacacattatcaaaatgcaatgttattcaatcaacaaaccggacg-----ttgaagttaatgataaaataaatctcccgttatctgcaggatat |
95 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2360632 |
caaacacacgcattatcaaaatgcaatgttattcaatcaacaaacagagcgggatattgaagttaatgataaaataaatctcccgttatctacaggatat |
2360533 |
T |
|
| Q |
96 |
cgagatgtccgaaaacagtaggtgaatgtgtaattgaaatatgnnnnnnngcctataattgattaagaaaatacattagagtactaactaatgaagatta |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| | |||||||||||||||| |
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| T |
2360532 |
cgagatgtccgaaaacagtaggtgaatgtgtaattgaaatatgaaaaaaagcctataattgatcaagaaaatacattag---aataactaatgaagatta |
2360436 |
T |
|
| Q |
196 |
atcccaacgcacttttacatattatagtttcaaacccctttcattt |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2360435 |
atcccaacgcacttttacatattatagtttcaaacccctttcattt |
2360390 |
T |
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