View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7978_low_2 (Length: 374)
Name: NF7978_low_2
Description: NF7978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7978_low_2 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 44633030 - 44632657
Alignment:
| Q |
1 |
aaacattaaaaaatcacaacacttccatacaaatcagatatgaagtgggaggaatagaagctactgatgagaaccctggagaagtccatcgcgaatttgg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44633030 |
aaacattaaaaaatcacaacacttccatacaaatcagatatgaagtgggaggaatagaagctactgatgagaaccctggagaagtccatcgcgaatttgg |
44632931 |
T |
|
| Q |
101 |
ctagcaacatcgcgaacagcgccaggtccatgtggaatgaacacagcagaagacttggaggcagccccaatttctttcaaagtgtcaaagtattgagtga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44632930 |
ctagcaacatcgcgaacagcgccaggtccatgtggaatgaacacagcagaagacttggaggcagccccaatttctttcaaagtgtcaaagtattgagtga |
44632831 |
T |
|
| Q |
201 |
caaggaccatatccatgacatcttttgcacttgtccctggtacattaaccgaaaatccaatcacactgtctctcaaaccatccacaatggcttgacgttg |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44632830 |
caaggaccatatccatgacatcttttgcacttgtccctggtacattaaccgagaatccaatcacactgtctctcaaaccatccacaatggcttgacgttg |
44632731 |
T |
|
| Q |
301 |
gcgagcaatacccatcccagagagatatttggactcagcctcaccctcggctcgctttatttgcaagatcttct |
374 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44632730 |
gcgagcaatacccatcccagagagatatttggactcagcctcaccctcggctcgctttatttgcaagatcttct |
44632657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 48 - 374
Target Start/End: Complemental strand, 44693380 - 44693054
Alignment:
| Q |
48 |
ggaggaatagaagctactgatgagaaccctggagaagtccatcgcgaatttggctagcaacatcgcgaacagcgccaggtccatgtggaatgaacacagc |
147 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||| | |||||||||||| ||||| |||||||| |||||||||||||||||||||||||| |
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| T |
44693380 |
ggaggagtagaagctactgatgagaaccctggagaagtccatcacaaatttggctagctacatcacgaacagcaccaggtccatgtggaatgaacacagc |
44693281 |
T |
|
| Q |
148 |
agaagacttggaggcagccccaatttctttcaaagtgtcaaagtattgagtgacaaggaccatatccatgacatcttttgcacttgtccctggtacatta |
247 |
Q |
| |
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|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
44693280 |
agaagacttggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaaggaccatatccatgacatcttttgcacttggccctggtacattc |
44693181 |
T |
|
| Q |
248 |
accgaaaatccaatcacactgtctctcaaaccatccacaatggcttgacgttggcgagcaatacccatcccagagagatatttggactcagcctcaccct |
347 |
Q |
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| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
44693180 |
tctgaaaatccaatcacactgtctctcaaaccatctacaatggcttgacgttgacgagcaatacccatcccagagagatatttagactcagcctcaccct |
44693081 |
T |
|
| Q |
348 |
cggctcgctttatttgcaagatcttct |
374 |
Q |
| |
|
|||||||||||||||||||||| |||| |
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| T |
44693080 |
cggctcgctttatttgcaagattttct |
44693054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 10 - 374
Target Start/End: Complemental strand, 44654893 - 44654523
Alignment:
| Q |
10 |
aaaatcacaacacttccatacaaatcagatatgaagtgggaggaatagaagctactgatgaga------accctggagaagtccatcgcgaatttggcta |
103 |
Q |
| |
|
|||||||| |||| ||| | ||||||||||||||| |||||| |||||| ||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
44654893 |
aaaatcaccacacccccacataaatcagatatgaagcaggaggagtagaagttactgatgagatagagaaccctggagaagtccatcacgaatttggcta |
44654794 |
T |
|
| Q |
104 |
gcaacatcgcgaacagcgccaggtccatgtggaatgaacacagcagaagacttggaggcagccccaatttctttcaaagtgtcaaagtattgagtgacaa |
203 |
Q |
| |
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|| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
44654793 |
gctacatcacgaacagcaccaggtccatgtggaatgaacacagcagaagacttggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaa |
44654694 |
T |
|
| Q |
204 |
ggaccatatccatgacatcttttgcacttgtccctggtacattaaccgaaaatccaatcacactgtctctcaaaccatccacaatggcttgacgttggcg |
303 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
44654693 |
ggaccatatccatgacatcttttgcagtcgtccctggtacattaactgaaaatccaatcacactgtctctcaaaccatccacaatcgcttgacgctggcg |
44654594 |
T |
|
| Q |
304 |
agcaatacccatcccagagagatatttggactcagcctcaccctcggctcgctttatttgcaagatcttct |
374 |
Q |
| |
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||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
44654593 |
agcaatacccaacccagagagatatttagactcagcctcaccctcggctcgcttaatttgcaagattttct |
44654523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 4 - 374
Target Start/End: Original strand, 44635815 - 44636185
Alignment:
| Q |
4 |
cattaaaaaatcacaacacttccatacaaatcagatatgaagtgggaggaatagaagctactgatgagaaccctggagaagtccatcgcgaatttggcta |
103 |
Q |
| |
|
|||||||||||||| |||| ||||| |||||||| |||| |||||||||||||||||| ||||||||||||||||||||| || ||||||||||| |
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| T |
44635815 |
cattaaaaaatcaccgcactcttatacagatcagataaaaagtaggaggaatagaagctactcatgagaaccctggagaagtccgtcacgaatttggctt |
44635914 |
T |
|
| Q |
104 |
gcaacatcgcgaacagcgccaggtccatgtggaatgaacacagcagaagacttggaggcagccccaatttctttcaaagtgtcaaagtattgagtgacaa |
203 |
Q |
| |
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| |||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
44635915 |
actacatcgcgaacagcaccaggtccgtgtggaatgaacacagcagaagatttggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaa |
44636014 |
T |
|
| Q |
204 |
ggaccatatccatgacatcttttgcacttgtccctggtacattaaccgaaaatccaatcacactgtctctcaaaccatccacaatggcttgacgttggcg |
303 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
44636015 |
ggaccaaatccatgacatctttagcacttgtccctggtacattaactgaaaatccaatcacactgtctctcaaaccatccacaatggcttgacgttgacg |
44636114 |
T |
|
| Q |
304 |
agcaatacccatcccagagagatatttggactcagcctcaccctcggctcgctttatttgcaagatcttct |
374 |
Q |
| |
|
||||||||||| |||| ||||||||| || ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
44636115 |
agcaatacccaccccatggagatatttagattcagcctcaccctcggctcgctttacttgcaagatcttct |
44636185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 69 - 374
Target Start/End: Complemental strand, 44683627 - 44683322
Alignment:
| Q |
69 |
gagaaccctggagaagtccatcgcgaatttggctagcaacatcgcgaacagcgccaggtccatgtggaatgaacacagcagaagacttggaggcagcccc |
168 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
44683627 |
gagaaccctggagaagtccatcacgaatttgactagctacatcacgaacagcgccaggtccgtgtggaatgaacacagcagaagacttggaggcagcccc |
44683528 |
T |
|
| Q |
169 |
aatttctttcaaagtgtcaaagtattgagtgacaaggaccatatccatgacatcttttgcacttgtccctggtacattaaccgaaaatccaatcacactg |
268 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||| |
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|
| T |
44683527 |
aatttctttcatagtgtcaaagtattgagtgacaaggaccatatccatgacatcttttgcagtcgtccctggtacattaactgaaaatccaatcacactg |
44683428 |
T |
|
| Q |
269 |
tctctcaaaccatccacaatggcttgacgttggcgagcaatacccatcccagagagatatttggactcagcctcaccctcggctcgctttatttgcaaga |
368 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
44683427 |
tctctcaaaccatccacaatggcttgacgctggcgagcaatacccaacccagagagatatttagactcagcctcaccctcggctcgcttaatttgcaaga |
44683328 |
T |
|
| Q |
369 |
tcttct |
374 |
Q |
| |
|
| |||| |
|
|
| T |
44683327 |
ttttct |
44683322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 48 - 312
Target Start/End: Complemental strand, 44625694 - 44625430
Alignment:
| Q |
48 |
ggaggaatagaagctactgatgagaaccctggagaagtccatcgcgaatttggctagcaacatcgcgaacagcgccaggtccatgtggaatgaacacagc |
147 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| | |||||||||||| ||||| |||||||| |||||||||||||||||||||||||| |
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|
| T |
44625694 |
ggaggagtagaagctactgatgagaaccctggagaagtccatcacaaatttggctagctacatcacgaacagcaccaggtccatgtggaatgaacacagc |
44625595 |
T |
|
| Q |
148 |
agaagacttggaggcagccccaatttctttcaaagtgtcaaagtattgagtgacaaggaccatatccatgacatcttttgcacttgtccctggtacatta |
247 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
44625594 |
agaagacttggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaaggaccatatccatgacatcttttgcagtcgtccctggtacatta |
44625495 |
T |
|
| Q |
248 |
accgaaaatccaatcacactgtctctcaaaccatccacaatggcttgacgttggcgagcaatacc |
312 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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|
| T |
44625494 |
actgaaaatccaatcacactgtctctcaaaccatccacaatcgcttgacgctggcgagcaatacc |
44625430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 116 - 339
Target Start/End: Complemental strand, 3205311 - 3205088
Alignment:
| Q |
116 |
acagcgccaggtccatgtggaatgaacacagcagaagacttggaggcagccccaatttctttcaaagtgtcaaagtattgagtgacaaggaccatatcca |
215 |
Q |
| |
|
||||| ||||| ||||||||||||||||||| || || || |||| || |||||||| |||| ||||| ||||||||||| || | ||||| |||| |
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|
| T |
3205311 |
acagcaccaggaccatgtggaatgaacacagatgacgattttgaggatgcaccaatttccttcatggtgtcgaagtattgagtcaccaacaccatgtcca |
3205212 |
T |
|
| Q |
216 |
tgacatcttttgcacttgtccctggtacattaaccgaaaatccaatcacactgtctctcaaaccatccacaatggcttgacgttggcgagcaatacccat |
315 |
Q |
| |
|
|||||||||| ||| |||| || || ||||| | || ||| ||| ||| |||||||||| || || ||||| ||||||||||||||||| ||||| | |
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| T |
3205211 |
tgacatctttagcagttgttccgggaacattctctgagaatgcaagcacgctgtctctcagtccgtcaacaattgcttgacgttggcgagctataccgag |
3205112 |
T |
|
| Q |
316 |
cccagagagatatttggactcagc |
339 |
Q |
| |
|
|| || ||||||||||||||||| |
|
|
| T |
3205111 |
tcctgacagatatttggactcagc |
3205088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 25103000 - 25103060
Alignment:
| Q |
167 |
ccaatttctttcaaagtgtcaaagtattgagtgacaaggaccatatccatgacatcttttg |
227 |
Q |
| |
|
||||| || ||||| |||||||||||||| || ||||| ||||| ||||||||||| |||| |
|
|
| T |
25103000 |
ccaatctccttcaatgtgtcaaagtattgggtcacaagaaccatgtccatgacatcctttg |
25103060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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