View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7978_low_3 (Length: 353)
Name: NF7978_low_3
Description: NF7978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7978_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 19 - 344
Target Start/End: Complemental strand, 41796163 - 41795841
Alignment:
| Q |
19 |
acatgctaacaatcagttgttatatgcagaaataacatagttttaacttttgagatatgctaattaattagctataactagttttatgaatcaagaagct |
118 |
Q |
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| T |
41796163 |
acatgctaacaatcagttgttatatgcagaaataacatagttttaacttttgagatatgctaattaattagctataactagttttatgaatcaagaagct |
41796064 |
T |
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| Q |
119 |
ttcctgagtttgaaatgactcctaacaattcctaagctataataccagttcctcgagccttttagataatgtgtttcggttctttatatcattatatgta |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41796063 |
ttcctgagtttgaaatgactcctaacaattcctaagctataataccagttcctcgagccttttagataatgtgtttcggttctttatatcattat-tgta |
41795965 |
T |
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| Q |
219 |
tatatggtcatggactaatctcatattagtatattccatttattattaacttcttgtttaaggatattccnnnnnnnnnnctccatatacatggcatctt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
41795964 |
tatatggtcatggactaatctcatattagtatattccatttattattaacttcttgcttaaggatattccatttttttt--tccatatacatggcatctt |
41795867 |
T |
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| Q |
319 |
gttaatcatactattatcagtattat |
344 |
Q |
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||||||||||||||||||| |||||| |
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| T |
41795866 |
gttaatcatactattatcattattat |
41795841 |
T |
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