View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7978_low_6 (Length: 319)
Name: NF7978_low_6
Description: NF7978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7978_low_6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 15 - 319
Target Start/End: Original strand, 13030153 - 13030457
Alignment:
| Q |
15 |
ctgtgatgtttctgagggtttgtgtattgtagttgaatttagcaaaattccannnnnnnnnngtgatagagtgttcttttgtgtatttagaatctaattc |
114 |
Q |
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| T |
13030153 |
ctgtgatgtttctgagggtttgtgtattgtagttgaatttagcaaaattccattttttttttgtgatagtgtgttcttttgtgtatttaggatctaattc |
13030252 |
T |
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| Q |
115 |
catctggattttctttctcttcaaggaatttgaatggttttggtgaattggtgtagactttgttgcaaaaatgaagtaaagttatagtttcttggcgaat |
214 |
Q |
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| T |
13030253 |
catctgggttttctttctcttcaaggaatttgaatggttttggtgaattggtgtagactttgttgcaaaaatgaagtaaagttatagtttcttggcgaat |
13030352 |
T |
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| Q |
215 |
tggtgaatttgaatgtctgtggcatatagtggtgatttagttgaagattaatttagatacaagtagtgaaaaagtgatggcagcagagtcaaatactggt |
314 |
Q |
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| T |
13030353 |
tggtgaatttgaatgtctgtggcatatagtggtgatttagttgaagattaatttagatacaagtagtgaaaaagtgatggcagcagagtcaaatactggt |
13030452 |
T |
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| Q |
315 |
tttca |
319 |
Q |
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| T |
13030453 |
tttca |
13030457 |
T |
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