View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7978_low_7 (Length: 306)
Name: NF7978_low_7
Description: NF7978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7978_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 12 - 293
Target Start/End: Original strand, 5611055 - 5611336
Alignment:
| Q |
12 |
aagaagggtgaacaatgttgagcgtcatcgtccgtcgatcggctacgataggtgcgcttagttcatctggattaagctcaagaacgacggcgtgagaacc |
111 |
Q |
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| T |
5611055 |
aagaagggtgaacaatgttgagcgtcatcgtccgtcgatcggctacgatgggtgcgcttagttcatctggattaagctcaagaacgacgacgtgagaacc |
5611154 |
T |
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| Q |
112 |
atattctctatgtttggtcagtaaatttcacagagatcgatcgagttagacatttccttcatcggatctttccatgatattgggaaaagtttgattcggc |
211 |
Q |
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| T |
5611155 |
atattctctatgtttggtcagtaaatttcacagagatcgatcgagttagacatttccttcatcggatcttttcatgatattgggaaaagtttgattcggc |
5611254 |
T |
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| Q |
212 |
tcatcacctatgaagaaatcaatgcttacatggatagctcaggtgaagaatgtagtttggttattccttgatcttgtttgtg |
293 |
Q |
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| T |
5611255 |
tcatcacctatgaagaaatcaatgcttacatggatagctcaggtgaagaatgtagtttggttattccttgatcttgtttgtg |
5611336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 271
Target Start/End: Complemental strand, 9582044 - 9581953
Alignment:
| Q |
180 |
tttccatgatattgggaaaagtttgattcggctcatcacctatgaagaaatcaatgcttacatggatagctcaggtgaagaatgtagtttgg |
271 |
Q |
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| T |
9582044 |
tttccataatattaagaaaagtttgattcgactcaggacgtacgaagaaatcaatacttctatggatagatcagatgaataatttagtttgg |
9581953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 134
Target Start/End: Complemental strand, 28285679 - 28285625
Alignment:
| Q |
80 |
ggattaagctcaagaacgacggcgtgagaaccatattctctatgtttggtcagta |
134 |
Q |
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| T |
28285679 |
ggatgaagctcatgaacgacgacgtgagaaccatattctcaatctttggtcagta |
28285625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 293
Target Start/End: Complemental strand, 35471868 - 35471792
Alignment:
| Q |
217 |
acctatgaagaaatcaatgcttacatggatagctcaggtgaagaatgtagtttggttattccttgatcttgtttgtg |
293 |
Q |
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| T |
35471868 |
acctatgaagaaatcatggcttgcatggatagaccatgtgaagaatttagtttgattgatccatgatcttgtgtgtg |
35471792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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