View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7978_low_9 (Length: 256)
Name: NF7978_low_9
Description: NF7978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7978_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 24 - 244
Target Start/End: Complemental strand, 35769424 - 35769204
Alignment:
| Q |
24 |
ttcaatcaggttaaccaagcaactgcagtgactaatcgtttaagatgacagagatccatttaatgggtagacttctcccaacaaatgcttttccatacgc |
123 |
Q |
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| T |
35769424 |
ttcaatcaggttaaccaagcaactgcagtgactaatcgtttaagatgacagagatccatttaatgggtagacttctcccaacaaatgcttttccatacgc |
35769325 |
T |
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| Q |
124 |
accgatcagtgattgatcggctgaccaaatgattaagtgactccaaacatctaccatttttgtcacaccatgttcagaatcatgttagtctttttaatcg |
223 |
Q |
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| T |
35769324 |
accgatcagtgattgatcggctgaccaaatgattaagtgactccaaacatctaccatttttgtcacaccatgttcagaatcatgttagtctttttaatcg |
35769225 |
T |
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| Q |
224 |
gtcaacctattccttgatatt |
244 |
Q |
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| T |
35769224 |
gtcaacctattccttgatatt |
35769204 |
T |
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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 127
Target Start/End: Complemental strand, 2025419 - 2025348
Alignment:
| Q |
56 |
taatcgtttaagatgacagagatccatttaatgggtagacttctcccaacaaatgcttttccatacgcaccg |
127 |
Q |
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| T |
2025419 |
taatcttttaagataactgagattcatttaaggggttgacatctcccaacaaatacttctccatacgcaccg |
2025348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 34338021 - 34338078
Alignment:
| Q |
74 |
gagatccatttaatgggtagacttctcccaacaaatgcttttccatacgcaccgatca |
131 |
Q |
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| T |
34338021 |
gagatccatttaaggggttgacctatcccaacaaatgtttttccatacacaccgatca |
34338078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 127
Target Start/End: Complemental strand, 41539057 - 41539004
Alignment:
| Q |
74 |
gagatccatttaatgggtagacttctcccaacaaatgcttttccatacgcaccg |
127 |
Q |
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||||||||||||| |||| ||||||||||||||||| |||||| ||||||||| |
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| T |
41539057 |
gagatccatttaaggggttgacttctcccaacaaatatttttccctacgcaccg |
41539004 |
T |
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