View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7979_high_2 (Length: 308)

Name: NF7979_high_2
Description: NF7979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7979_high_2
NF7979_high_2
[»] chr6 (12 HSPs)
chr6 (3-293)||(6935140-6935430)
chr6 (1-242)||(6921323-6921564)
chr6 (3-240)||(6942942-6943166)
chr6 (1-240)||(6947855-6948094)
chr6 (1-240)||(6954494-6954733)
chr6 (1-215)||(20770506-20770720)
chr6 (156-215)||(17369675-17369734)
chr6 (141-211)||(14749393-14749463)
chr6 (147-194)||(19746715-19746762)
chr6 (127-194)||(34861892-34861959)
chr6 (249-285)||(6947795-6947831)
chr6 (97-213)||(24254428-24254544)
[»] chr7 (41 HSPs)
chr7 (9-240)||(1985930-1986161)
chr7 (86-215)||(13416911-13417040)
chr7 (92-227)||(18514775-18514910)
chr7 (92-227)||(15571883-15572018)
chr7 (97-213)||(19344577-19344693)
chr7 (144-215)||(14076677-14076748)
chr7 (144-215)||(14386705-14386776)
chr7 (119-214)||(19604464-19604559)
chr7 (146-215)||(660847-660916)
chr7 (119-215)||(22100467-22100563)
chr7 (1-68)||(14076551-14076618)
chr7 (1-68)||(14386579-14386646)
chr7 (107-215)||(6864807-6864914)
chr7 (127-215)||(9807806-9807894)
chr7 (139-215)||(22063636-22063712)
chr7 (119-194)||(22080842-22080917)
chr7 (102-208)||(22021349-22021455)
chr7 (145-214)||(29881256-29881325)
chr7 (119-215)||(20058057-20058153)
chr7 (102-213)||(22028585-22028696)
chr7 (119-194)||(22070085-22070160)
chr7 (145-215)||(19637217-19637287)
chr7 (145-215)||(29454103-29454173)
chr7 (145-214)||(29867236-29867305)
chr7 (145-213)||(12819918-12819986)
chr7 (1-73)||(15572052-15572124)
chr7 (141-213)||(19351071-19351143)
chr7 (141-213)||(19357906-19357978)
chr7 (145-213)||(19722018-19722086)
chr7 (139-215)||(20352089-20352165)
chr7 (4-72)||(24385051-24385119)
chr7 (151-215)||(29874517-29874581)
chr7 (145-227)||(29859454-29859536)
chr7 (102-199)||(16839397-16839494)
chr7 (141-214)||(18952906-18952979)
chr7 (141-214)||(18982953-18983026)
chr7 (141-214)||(18997599-18997672)
chr7 (138-227)||(20338917-20339006)
chr7 (249-285)||(1985870-1985906)
chr7 (139-227)||(20374491-20374579)
chr7 (147-215)||(24002201-24002269)
[»] chr4 (14 HSPs)
chr4 (102-215)||(53774797-53774910)
chr4 (102-215)||(3565701-3565814)
chr4 (102-215)||(8443454-8443567)
chr4 (119-215)||(11970982-11971078)
chr4 (119-215)||(11981683-11981779)
chr4 (139-215)||(3557720-3557796)
chr4 (107-215)||(3560958-3561066)
chr4 (138-211)||(837769-837842)
chr4 (102-177)||(10475164-10475239)
chr4 (139-221)||(6372439-6372521)
chr4 (102-192)||(10464226-10464316)
chr4 (156-214)||(6392835-6392893)
chr4 (145-181)||(10468042-10468078)
chr4 (145-181)||(10482181-10482217)
[»] chr2 (9 HSPs)
chr2 (119-227)||(14514874-14514982)
chr2 (139-213)||(18908811-18908885)
chr2 (139-213)||(18920767-18920841)
chr2 (140-213)||(18913559-18913632)
chr2 (119-215)||(554450-554546)
chr2 (145-199)||(25698507-25698561)
chr2 (144-192)||(20975557-20975605)
chr2 (143-215)||(25377072-25377144)
chr2 (145-206)||(20980604-20980665)
[»] chr5 (6 HSPs)
chr5 (1-215)||(18964830-18965047)
chr5 (102-213)||(29647633-29647744)
chr5 (130-213)||(29597554-29597637)
chr5 (134-213)||(29642348-29642427)
chr5 (139-214)||(24330900-24330975)
chr5 (147-194)||(23086784-23086831)
[»] chr1 (8 HSPs)
chr1 (127-221)||(50645479-50645573)
chr1 (145-216)||(4570927-4570998)
chr1 (139-214)||(21855384-21855459)
chr1 (148-214)||(4014966-4015032)
chr1 (145-215)||(39379061-39379131)
chr1 (145-214)||(10218985-10219054)
chr1 (145-227)||(17560761-17560843)
chr1 (150-215)||(15961233-15961298)
[»] scaffold0867 (1 HSPs)
scaffold0867 (119-215)||(4669-4765)
[»] chr8 (6 HSPs)
chr8 (127-181)||(42846459-42846513)
chr8 (127-228)||(27618473-27618574)
chr8 (147-199)||(29390288-29390340)
chr8 (129-199)||(11339435-11339505)
chr8 (129-199)||(11345117-11345187)
chr8 (147-191)||(11338600-11338644)
[»] chr3 (4 HSPs)
chr3 (151-215)||(3625740-3625804)
chr3 (143-215)||(25901279-25901351)
chr3 (143-215)||(25915297-25915369)
chr3 (140-194)||(3837904-3837958)
[»] scaffold0354 (1 HSPs)
scaffold0354 (156-211)||(7474-7529)
[»] scaffold0267 (1 HSPs)
scaffold0267 (140-194)||(13385-13439)


Alignment Details
Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 3 - 293
Target Start/End: Complemental strand, 6935430 - 6935140
Alignment:
Q  3 gtgatgatctcacttgatttggggacagagacatgtacaaaattgttgctccctcaatgttgtgatgaagagctacatggttttcctactctttctgtat 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||    
T  6935430 gtgatgatctcacttgatttggggacagagacatgtacaaaattgttgctccctcgatgttgtgatgaagagctacatggctttcctactctttctggat 6935331  T
Q  103 tgatggattgcctctatttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattcct 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6935330 tgatggattgcctctatttttcttatgattttaagaaaacccattatgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattcct 6935231  T
Q  203 taaaattagttataccaatcttcaacaagattttaaaactcacgagacctattatcctcctcgattgattccattgtgtttttgtaataat 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  6935230 taaaattagttataccaatcttcaacaagattttaaaactcacgagacctattatcctcctcgattgattccattgtgcttttctaataat 6935140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 6921564 - 6921323
Alignment:
Q  1 ttgtgatgatctcacttgatttggggacagagacatgtacaaaattgttgctccctcaatgttgtgatgaagagctacatggttttcctactctttctgt 100  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||  | |||| |||||||||||    
T  6921564 ttgtgatgatctcacttgatttggggacagagacatatacacaattgttgctccctcgatgttgtgatgaagagctacataatgttccaactctttctgt 6921465  T
Q  101 attgatggattgcctctatttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattc 200  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||    
T  6921464 attgatggattgcctctatttttcttatgattctaagaaaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattc 6921365  T
Q  201 cttaaaattagttataccaatcttcaacaagattttaaaact 242  Q
    ||||||||||||||||| ||||||| | |  |||||||||||    
T  6921364 cttaaaattagttatacgaatcttctaaacaattttaaaact 6921323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 3 - 240
Target Start/End: Complemental strand, 6943166 - 6942942
Alignment:
Q  3 gtgatgatctcacttgatttggggacagagacatgtacaaaattgttgctccctcaatgttgtgatgaagagctacatggttttcctactctttctgtat 102  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||               
T  6943166 gtgatgatctcacttgatttggggacagagacatatacaaaattgttgctccctcaatgttgtgatgaagagctacatgattttcctac----------- 6943078  T
Q  103 tgatggattgcctctatttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattcct 202  Q
      ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||| |||  |||||||    
T  6943077 --atggattgcctctatttttcttatgattttaagaaaacctattttgttatttagcaaatgaaggaatttggagttgaagaatcttagacgcaattcct 6942980  T
Q  203 taaaattagttataccaatcttcaacaagattttaaaa 240  Q
    ||||||||| ||||| ||||||| | | ||||||||||    
T  6942979 taaaattagatatacaaatcttctaaacgattttaaaa 6942942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 6948094 - 6947855
Alignment:
Q  1 ttgtgatgatctcacttgatttggggacagagacatgtacaaaattgttgctccctcaatgttgtgatgaagagctacatggttttcctactctttctgt 100  Q
    ||||||||||||||||||||||||||||||||| || ||||   ||||||||||||| ||||||||||||||||||||||| | |||| |||||||||||    
T  6948094 ttgtgatgatctcacttgatttggggacagagagatatacacggttgttgctccctcgatgttgtgatgaagagctacatgatgttccaactctttctgt 6947995  T
Q  101 attgatggattgcctctatttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattc 200  Q
     |||||||||||||| | ||||||  ||||||| ||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||| |||||    
T  6947994 gttgatggattgcctttgtttttcacatgatttcaagaaaacccactttgttctttggcaaatgaaggaatttggagttgaagaatcttggactcaattc 6947895  T
Q  201 cttaaaattagttataccaatcttcaacaagattttaaaa 240  Q
    |||||||||||||||   ||||||| | ||||| ||||||    
T  6947894 cttaaaattagttatgtgaatcttccaaaagatattaaaa 6947855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 6954733 - 6954494
Alignment:
Q  1 ttgtgatgatctcacttgatttggggacagagacatgtacaaaattgttgctccctcaatgttgtgatgaagagctacatggttttcctactctttctgt 100  Q
    ||||||| |||||||||||| || |||||||||||| |||| | ||||||||||| | |||||||||||||||||||   |||  | | |||||||||||    
T  6954733 ttgtgatcatctcacttgatatgaggacagagacatatacacagttgttgctcccccgatgttgtgatgaagagctaaccggtgctgcaactctttctgt 6954634  T
Q  101 attgatggattgcctctatttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattc 200  Q
    ||||||||||||||||| ||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||     
T  6954633 attgatggattgcctctgtttatcttatgatttcaacaaaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattg 6954534  T
Q  201 cttaaaattagttataccaatcttcaacaagattttaaaa 240  Q
     |||||||||||| | | | ||||| | ||||||||||||    
T  6954533 attaaaattagttttccgattcttctaaaagattttaaaa 6954494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 20770506 - 20770720
Alignment:
Q  1 ttgtgatgatctcacttgatttggggacagagacatgtacaaaattgttgctccctcaatgttgtgatgaagagctacatggttttcctactctttctgt 100  Q
    ||||||| ||||| |||||||||| || ||||||||  | | | ||||| |||||||||||||||||||||   | || || |  ||  ||||||| |||    
T  20770506 ttgtgatcatctcccttgatttggcgaaagagacatacaaacagttgttactccctcaatgttgtgatgaatttccacttgataatcaaactctttgtgt 20770605  T
Q  101 attgatggattgcctctatttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattc 200  Q
     |||||||||||  | | ||||||| ||||| |||| |||||  |||||||||| ||||||||||||||||||||| || |||| || |||| | |||||    
T  20770606 gttgatggattgtatttgtttttctcatgatgttaaaaaaacttattttgttatatggcaaatgaaggaatttggaattgaagagtcatggattcaattc 20770705  T
Q  201 cttaaaattagttat 215  Q
    |||||||||||||||    
T  20770706 cttaaaattagttat 20770720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 156 - 215
Target Start/End: Original strand, 17369675 - 17369734
Alignment:
Q  156 tggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 215  Q
    |||||||||||||||||||||||| |||| ||||||||| |||| |||||||||||||||    
T  17369675 tggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttat 17369734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 211
Target Start/End: Original strand, 14749393 - 14749463
Alignment:
Q  141 acccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattag 211  Q
    |||||||||||| | |||   |||| |||||||||||||||||| ||||||||| ||||||| ||||||||    
T  14749393 acccattttgttttatggaggatgatggaatttggagttcaagagtcttggactcaattcctcaaaattag 14749463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 147 - 194
Target Start/End: Complemental strand, 19746762 - 19746715
Alignment:
Q  147 tttgttatttggcaaatgaaggaatttggagttcaagaatcttggact 194  Q
    |||||||| |||||||||||| | |||||||||||||| |||||||||    
T  19746762 tttgttatatggcaaatgaagaagtttggagttcaagagtcttggact 19746715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 194
Target Start/End: Complemental strand, 34861959 - 34861892
Alignment:
Q  127 atgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggact 194  Q
    ||||||||| ||||||  | |||||||| |||||||||||||| ||||||||||  || |||||||||    
T  34861959 atgattttaggaaaactgaatttgttatatggcaaatgaaggagtttggagttcgggagtcttggact 34861892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 6947831 - 6947795
Alignment:
Q  249 acctattatcctcctcgattgattccattgtgttttt 285  Q
    |||||||||||||||| |||||||||| |||||||||    
T  6947831 acctattatcctcctcaattgattccactgtgttttt 6947795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 213
Target Start/End: Complemental strand, 24254544 - 24254428
Alignment:
Q  97 ctgtattgatggattgcctctatttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaa 196  Q
    |||| |||||||| ||||| | ||||||| |  || | |||| ||| ||||||||||| ||||| |||  ||||||||||||  || ||||||||||| |    
T  24254544 ctgtgttgatggactgcctttgtttttctcactatatcaagagaactcattttgttatatggcagatgtcggaatttggagtcgaacaatcttggactca 24254445  T
Q  197 attccttaaaattagtt 213  Q
    |||| | ||||| ||||    
T  24254444 attcatcaaaatcagtt 24254428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 41)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 9 - 240
Target Start/End: Complemental strand, 1986161 - 1985930
Alignment:
Q  9 atctcacttgatttggggacagagacatgtacaaaattgttgctccctcaatgttgtgatgaagagctacatggttttcctactctttctgtattgatgg 108  Q
    ||||||||||||||||||||||||| || |||| | ||||||||||||| || |||||||||||| ||||||||| |||| ||||||||||| |||||||    
T  1986161 atctcacttgatttggggacagagagatatacacagttgttgctccctcgatattgtgatgaagatctacatggtgttccaactctttctgtgttgatgg 1986062  T
Q  109 attgcctctatttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaat 208  Q
    ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||| ||||  |||||||    
T  1986061 attgcctctatttttcttatgatttcaagaaaacccattttgttctttggcaaatgaaggaatttggcgttgaagaatcttggactcaattgtttaaaat 1985962  T
Q  209 tagttataccaatcttcaacaagattttaaaa 240  Q
    ||||||||  ||||||| | ||||| ||||||    
T  1985961 tagttatatgaatcttctagaagatattaaaa 1985930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 86 - 215
Target Start/End: Complemental strand, 13417040 - 13416911
Alignment:
Q  86 tcctactctttctgtattgatggattgcctctatttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaa 185  Q
    ||||||||||||| | ||||  ||||| || | ||||||||||||||||||||||||| ||||| | || |||||||||||||||||||||||| ||||     
T  13417040 tcctactctttctatgttgaatgattgtctttgtttttcttatgattttaagaaaacctattttatcatatggcaaatgaaggaatttggagttgaagag 13416941  T
Q  186 tcttggactaaattccttaaaattagttat 215  Q
    ||||||  | ||||| ||||||||||||||    
T  13416940 tcttgggttgaattcgttaaaattagttat 13416911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 92 - 227
Target Start/End: Complemental strand, 18514910 - 18514775
Alignment:
Q  92 tctttctgtattgatggattgcctctatttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttgg 191  Q
    ||||||||| || ||||||||| | | ||||||||||||||| ||||||| ||||||  |||| ||| ||||| | |||||||||||| || | ||||||    
T  18514910 tctttctgttttaatggattgcatgtgtttttcttatgatttcaagaaaagccatttcattatatggaaaatggacgaatttggagttgaaaactcttgg 18514811  T
Q  192 actaaattccttaaaattagttataccaatcttcaa 227  Q
    ||| |||||||||||||||||||||  |||||||||    
T  18514810 actcaattccttaaaattagttatatgaatcttcaa 18514775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 92 - 227
Target Start/End: Complemental strand, 15572018 - 15571883
Alignment:
Q  92 tctttctgtattgatggattgcctctatttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttgg 191  Q
    ||||||||| || |||||||| || | ||||||||||||||| |||  |||||||||||| || |||||||||| ||| ||||||||| |||| ||||||    
T  15572018 tctttctgtgtttatggattgtctttgtttttcttatgatttcaagggaacccattttgtcatgtggcaaatgagggagtttggagttgaagagtcttgg 15571919  T
Q  192 actaaattccttaaaattagttataccaatcttcaa 227  Q
      | |||||| ||||||||||||| | |||||||||    
T  15571918 gttcaattccataaaattagttattcaaatcttcaa 15571883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 97 - 213
Target Start/End: Complemental strand, 19344693 - 19344577
Alignment:
Q  97 ctgtattgatggattgcctctatttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaa 196  Q
    ||||||||||||| ||||| | ||||||| |  || | ||||| || ||||||||||| ||||| |||| ||||||||||||| || ||||||||||| |    
T  19344693 ctgtattgatggactgcctttgtttttctcacaatctcaagaacactcattttgttatatggcagatgatggaatttggagttgaacaatcttggactca 19344594  T
Q  197 attccttaaaattagtt 213  Q
    ||| |||||||||||||    
T  19344593 atttcttaaaattagtt 19344577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 14076677 - 14076748
Alignment:
Q  144 cattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 215  Q
    ||||| ||||| |||||||||||||||||||||||| |||| ||||||||| |||| |||||||||||||||    
T  14076677 catttcgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttat 14076748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 14386705 - 14386776
Alignment:
Q  144 cattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 215  Q
    ||||| ||||| |||||||||||||||||||||||| |||| ||||||||| |||| |||||||||||||||    
T  14386705 catttcgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttat 14386776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 119 - 214
Target Start/End: Complemental strand, 19604559 - 19604464
Alignment:
Q  119 tttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagtta 214  Q
    ||||||| |||||||| | ||||| || ||| |||| ||||| |||||||||||||||||| |||| || |||||| |||||||||||||||||||    
T  19604559 tttttctcatgattttcataaaactcactttattatatggcagatgaaggaatttggagttgaagactcctggactcaattccttaaaattagtta 19604464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 660916 - 660847
Alignment:
Q  146 ttttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 215  Q
    ||||||||| ||||| |||||||||||| ||||| |||| ||||||||| ||||||||||||||||||||    
T  660916 ttttgttatatggcagatgaaggaatttcgagttgaagagtcttggactcaattccttaaaattagttat 660847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 119 - 215
Target Start/End: Original strand, 22100467 - 22100563
Alignment:
Q  119 tttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 215  Q
    ||||||| ||||||| || ||||| |||||| |||| |||||||||||| |||||||||||||||| ||||||||| | ||  | ||||||||||||    
T  22100467 tttttctcatgatttcaaaaaaactcattttattatatggcaaatgaagaaatttggagttcaagagtcttggactcagttattcaaaattagttat 22100563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 14076551 - 14076618
Alignment:
Q  1 ttgtgatgatctcacttgatttggggacagagacatgtacaaaattgttgctccctcaatgttgtgat 68  Q
    ||||||| |||||||||||||||||||| ||||||| |||| ||||||| ||||||| ||||||||||    
T  14076551 ttgtgattatctcacttgatttggggactgagacatatacacaattgttactccctccatgttgtgat 14076618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 14386579 - 14386646
Alignment:
Q  1 ttgtgatgatctcacttgatttggggacagagacatgtacaaaattgttgctccctcaatgttgtgat 68  Q
    ||||||| |||||||||||||||||||| ||||||| |||| ||||||| ||||||| ||||||||||    
T  14386579 ttgtgattatctcacttgatttggggactgagacatatacacaattgttactccctccatgttgtgat 14386646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 215
Target Start/End: Complemental strand, 6864914 - 6864807
Alignment:
Q  107 ggattgcctctatttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaa 206  Q
    |||||| |||||||||||| ||||||| ||  |||| ||||| || || |||  ||||||||||||||||||| |||| ||||||||| | |||||||||    
T  6864914 ggattgtctctatttttctcatgatttcaaacaaactcattt-gtaatatggttaatgaaggaatttggagttgaagagtcttggactcagttccttaaa 6864816  T
Q  207 attagttat 215  Q
    | |||||||    
T  6864815 actagttat 6864807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 9807806 - 9807894
Alignment:
Q  127 atgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 215  Q
    ||||||| ||||||||| |||| ||||| ||||| |||||||||||||||||| |||| |||||||  ||| |||||| ||||| ||||    
T  9807806 atgatttgaagaaaaccgatttcgttatatggcagatgaaggaatttggagttgaagagtcttggatgaaactccttacaattaattat 9807894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 22063636 - 22063712
Alignment:
Q  139 aaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 215  Q
    |||| ||||||||||| ||||||||||||||||||||| ||||||| ||||||||| | ||  | ||||||||||||    
T  22063636 aaactcattttgttatatggcaaatgaaggaatttggatttcaagagtcttggactcagttattcaaaattagttat 22063712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 194
Target Start/End: Original strand, 22080842 - 22080917
Alignment:
Q  119 tttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggact 194  Q
    ||||||| ||||||| ||  |||| |||||| |||| |||||||||||| |||||||||||||||| |||||||||    
T  22080842 tttttctcatgatttcaaacaaactcattttattatatggcaaatgaagcaatttggagttcaagagtcttggact 22080917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 102 - 208
Target Start/End: Original strand, 22021349 - 22021455
Alignment:
Q  102 ttgatggattgcctctatttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattcc 201  Q
    |||||||||||| | | ||||||| ||  | | |||||||||||||| ||||| ||||| |||| ||| | ||||||| |||||||||||||| |||| |    
T  22021349 ttgatggattgcatttgtttttctcatcttgtgaagaaaacccatttggttatatggcagatgatggattatggagttgaagaatcttggactcaattac 22021448  T
Q  202 ttaaaat 208  Q
    |||||||    
T  22021449 ttaaaat 22021455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 29881256 - 29881325
Alignment:
Q  145 attttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagtta 214  Q
    ||||| || |||||||||||||| ||||||| ||| |||| ||||||||| ||||||||| |||||||||    
T  29881256 attttattgtttggcaaatgaagaaatttggggttgaagattcttggactcaattccttagaattagtta 29881325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 119 - 215
Target Start/End: Complemental strand, 20058153 - 20058057
Alignment:
Q  119 tttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 215  Q
    |||||| |||||||||||| |||  ||||||||||| ||| ||||| |||||||  ||||| |||| ||||||  | |||| |||||||||||||||    
T  20058153 tttttcgtatgattttaagcaaagtcattttgttatatggaaaatggaggaattcagagttgaagagtcttggtgtcaatttcttaaaattagttat 20058057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 213
Target Start/End: Original strand, 22028585 - 22028696
Alignment:
Q  102 ttgatggattgcctctatttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattcc 201  Q
    |||||||||||||| | ||||||| | |   | ||| |||||||||||||||| ||| |||||| ||| | ||||||| |||| ||||||||| |||| |    
T  22028585 ttgatggattgcctttgtttttctgaagtggtcaaggaaacccattttgttatatggaaaatgacggattatggagttgaagagtcttggactcaattac 22028684  T
Q  202 ttaaaattagtt 213  Q
    |||| |||||||    
T  22028685 ttaagattagtt 22028696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 194
Target Start/End: Original strand, 22070085 - 22070160
Alignment:
Q  119 tttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggact 194  Q
    ||||||| ||||||| ||   ||| |||||| |||| |||||||||||| |||||||||||||||| |||||||||    
T  22070085 tttttctcatgatttcaaacgaactcattttattatatggcaaatgaagcaatttggagttcaagagtcttggact 22070160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 215
Target Start/End: Complemental strand, 19637287 - 19637217
Alignment:
Q  145 attttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 215  Q
    ||||| |||| ||||||||||||||||||||||||||||| || |||| |    |||||||||||||||||    
T  19637287 attttattatatggcaaatgaaggaatttggagttcaagagtcgtggattcggctccttaaaattagttat 19637217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 215
Target Start/End: Complemental strand, 29454173 - 29454103
Alignment:
Q  145 attttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 215  Q
    |||||||||| ||||  |||| | ||||||||||| |||| ||||||||| ||||| ||||||||||||||    
T  29454173 attttgttatatggcggatgatgaaatttggagttgaagattcttggactcaattctttaaaattagttat 29454103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 29867236 - 29867305
Alignment:
Q  145 attttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagtta 214  Q
    ||||| |||| |||||||||||| |||| || ||| |||| ||||||||| ||||||||| |||||||||    
T  29867236 attttattatatggcaaatgaagaaattcggggttgaagattcttggactcaattccttagaattagtta 29867305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 213
Target Start/End: Complemental strand, 12819986 - 12819918
Alignment:
Q  145 attttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagtt 213  Q
    |||||||| | ||||| |||| ||||||||||||| || |||| |||||| ||||||||||||| ||||    
T  12819986 attttgttgtatggcagatgacggaatttggagttgaacaatcctggactcaattccttaaaatcagtt 12819918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 15572124 - 15572052
Alignment:
Q  1 ttgtgatgatctcacttgatttggggacagagacatgtacaaaattgttgctccctcaatgttgtgatgaaga 73  Q
    ||||||| ||||| ||||||||||||||||| |||| || | ||| | |||| |||| |||||||||||||||    
T  15572124 ttgtgataatctcgcttgatttggggacagaaacatatagacaatcgatgctacctcgatgttgtgatgaaga 15572052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 213
Target Start/End: Complemental strand, 19351143 - 19351071
Alignment:
Q  141 acccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagtt 213  Q
    |||||||||||| | ||||| |||| ||||||||||||| | || |||||||||  |||||| ||||||||||    
T  19351143 acccattttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagtt 19351071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 213
Target Start/End: Original strand, 19357906 - 19357978
Alignment:
Q  141 acccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagtt 213  Q
    |||||||| ||| | ||| | |||| |||||||||||||||||| ||||||||| ||||| | ||||||||||    
T  19357906 acccatttcgttttatggaagatgatggaatttggagttcaagagtcttggactcaattcttaaaaattagtt 19357978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 213
Target Start/End: Original strand, 19722018 - 19722086
Alignment:
Q  145 attttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagtt 213  Q
    |||||||| | ||| | |||| |||||||||||||||||| ||||||||| ||||||| ||||| ||||    
T  19722018 attttgttttatggaagatgatggaatttggagttcaagattcttggactcaattcctcaaaatcagtt 19722086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 20352089 - 20352165
Alignment:
Q  139 aaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 215  Q
    |||| |||||||| || ||| |||||||||||||||||||| |||| || |||||| || |  ||||||||||||||    
T  20352089 aaactcattttgtaatatgggaaatgaaggaatttggagttgaagattcatggactcaactttttaaaattagttat 20352165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 24385051 - 24385119
Alignment:
Q  4 tgatgatctcacttgatttggggacagagacatgtacaaaattgttgctccctcaatgttgtgatgaag 72  Q
    |||| ||||||||| ||||||||||||||| ||  ||| ||||||||| ||||||| ||| ||||||||    
T  24385051 tgatcatctcacttaatttggggacagagaaatacacacaattgttgccccctcaaggttctgatgaag 24385119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 29874517 - 29874581
Alignment:
Q  151 ttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 215  Q
    |||| |||||||||||| ||||||| ||| |||| |||||||||  ||| |||||||||||||||    
T  29874517 ttatatggcaaatgaagaaatttggggttgaagattcttggactccattacttaaaattagttat 29874581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 227
Target Start/End: Original strand, 29859454 - 29859536
Alignment:
Q  145 attttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttataccaatcttcaa 227  Q
    |||| ||||| ||| | |||||| ||||||||||| |||| ||||||||   ||| |||||||||||||||  ||||||||||    
T  29859454 atttcgttatatgggagatgaagaaatttggagttgaagattcttggaccccatttcttaaaattagttatcacaatcttcaa 29859536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 199
Target Start/End: Complemental strand, 16839494 - 16839397
Alignment:
Q  102 ttgatggattgcctctatttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaatt 199  Q
    |||||||| ||||| | ||||||| ||| | |||||||||| ||| ||||||| ||| | ||||  || | |||||||||||| ||||||||| ||||    
T  16839494 ttgatggactgcctttgtttttctcatgttgttaagaaaactcatcttgttatatggaagatgacagattatggagttcaagagtcttggactcaatt 16839397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 214
Target Start/End: Complemental strand, 18952979 - 18952906
Alignment:
Q  141 acccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagtta 214  Q
    ||||||||| | || ||||| |||||||||||||||||| |  | || |||||| | |||||||||||||||||    
T  18952979 acccattttatcatatggcagatgaaggaatttggagttgacaagtcatggactcagttccttaaaattagtta 18952906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 214
Target Start/End: Complemental strand, 18983026 - 18982953
Alignment:
Q  141 acccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagtta 214  Q
    ||||||||| | || ||||| |||||||||||||||||| |  | || |||||| | |||||||||||||||||    
T  18983026 acccattttatcatatggcagatgaaggaatttggagttgacaagtcctggactcagttccttaaaattagtta 18982953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 214
Target Start/End: Complemental strand, 18997672 - 18997599
Alignment:
Q  141 acccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagtta 214  Q
    ||||||||| | || ||||| |||||||||||||||||| |  | || |||||| | |||||||||||||||||    
T  18997672 acccattttatcatatggcagatgaaggaatttggagttgacaagtcctggactcagttccttaaaattagtta 18997599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 227
Target Start/End: Original strand, 20338917 - 20339006
Alignment:
Q  138 aaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttataccaatcttcaa 227  Q
    ||||| |||||||| || ||| ||||||||||||| |||||| |||| ||||||||| || || || |||| ||||| |  |||||||||    
T  20338917 aaaactcattttgtaatatggaaaatgaaggaattaggagttgaagattcttggactcaactctttcaaatcagttacaataatcttcaa 20339006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 1985906 - 1985870
Alignment:
Q  249 acctattatcctcctcgattgattccattgtgttttt 285  Q
    |||||||||||||||||||||| |||||||| |||||    
T  1985906 acctattatcctcctcgattgactccattgtattttt 1985870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 227
Target Start/End: Complemental strand, 20374579 - 20374491
Alignment:
Q  139 aaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttataccaatcttcaa 227  Q
    |||| |||||||| || ||| ||||||||||||||||||||  ||| || |||| | || |  |||||||||||||||  |||||||||    
T  20374579 aaactcattttgtaatatgggaaatgaaggaatttggagttggagattcatggattcaactttttaaaattagttataataatcttcaa 20374491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 215
Target Start/End: Original strand, 24002201 - 24002269
Alignment:
Q  147 tttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 215  Q
    |||||| | ||||| |||||||| |  ||||||||||| ||||||||| |||| ||||| |||||||||    
T  24002201 tttgttttatggcatatgaaggagtacggagttcaagagtcttggactcaattacttaagattagttat 24002269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 102 - 215
Target Start/End: Original strand, 53774797 - 53774910
Alignment:
Q  102 ttgatggattgcctctatttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattcc 201  Q
    |||||||||||  | | ||||||||||||||||||  |||| ||||||||||| |||||||||||||||||||||||| |||| ||||||||| ||||||    
T  53774797 ttgatggattgtatttgtttttcttatgattttaaagaaactcattttgttatatggcaaatgaaggaatttggagttgaagagtcttggactcaattcc 53774896  T
Q  202 ttaaaattagttat 215  Q
    ||||||||||||||    
T  53774897 ttaaaattagttat 53774910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 102 - 215
Target Start/End: Original strand, 3565701 - 3565814
Alignment:
Q  102 ttgatggattgcctctatttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattcc 201  Q
    |||| ||| ||||| | ||||||||||  || |||||||||| ||||| |||| ||||| |||||||||||||| ||| |||| ||||||||| |||| |    
T  3565701 ttgagggactgcctttgtttttcttattgttataagaaaaccgattttattatatggcagatgaaggaatttggggttgaagagtcttggactcaatttc 3565800  T
Q  202 ttaaaattagttat 215  Q
    ||||||||||||||    
T  3565801 ttaaaattagttat 3565814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 102 - 215
Target Start/End: Complemental strand, 8443567 - 8443454
Alignment:
Q  102 ttgatggattgcctctatttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattcc 201  Q
    |||||||| || || | ||||||||||||||| |||| ||| |||| |||||||||||| |||||||| ||||||||||| || ||||||| | ||||      
T  8443567 ttgatggactgtctttgtttttcttatgatttcaagagaactcattatgttatttggcagatgaaggattttggagttcacgagtcttggattcaattat 8443468  T
Q  202 ttaaaattagttat 215  Q
    ||||||||||||||    
T  8443467 ttaaaattagttat 8443454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 119 - 215
Target Start/End: Complemental strand, 11971078 - 11970982
Alignment:
Q  119 tttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 215  Q
    ||||||| |||||||| |  |||| ||||||||||| |||||||||||||||||||||||  |||| ||||||||| |||| |||| ||||||||||    
T  11971078 tttttctcatgattttgaacaaactcattttgttatatggcaaatgaaggaatttggagtggaagagtcttggactcaatttcttagaattagttat 11970982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 119 - 215
Target Start/End: Complemental strand, 11981779 - 11981683
Alignment:
Q  119 tttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 215  Q
    ||||||| |||||||| |  |||| ||||||||||| |||||||||||||||||||||||  |||| || ||||||  ||| |||||||||||||||    
T  11981779 tttttctcatgattttcaacaaactcattttgttatatggcaaatgaaggaatttggagtggaagagtcctggactcgatttcttaaaattagttat 11981683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 3557720 - 3557796
Alignment:
Q  139 aaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 215  Q
    ||||| ||||| |||| ||||| |||||||||||||| ||| |||| ||||||||| |||| |||||||||||||||    
T  3557720 aaaccgattttattatatggcatatgaaggaatttggggttgaagagtcttggactcaatttcttaaaattagttat 3557796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 215
Target Start/End: Complemental strand, 3561066 - 3560958
Alignment:
Q  107 ggattgcctctatttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaa 206  Q
    ||||||||| | ||||||||||  ||  ||| ||||| ||||| |||||||||| |||||  ||||||| ||| |||| ||||||||| |||| ||||||    
T  3561066 ggattgcctttgtttttcttattcttacaaggaaaccgattttattatttggcagatgaaaaaatttggggttgaagagtcttggactcaatttcttaaa 3560967  T
Q  207 attagttat 215  Q
    |||||||||    
T  3560966 attagttat 3560958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 211
Target Start/End: Original strand, 837769 - 837842
Alignment:
Q  138 aaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattag 211  Q
    ||||||||||||||||| |||||||||||| | ||||| |||||||| ||||||| | ||||  ||||||||||    
T  837769 aaaacccattttgttatatggcaaatgaagaattttggtgttcaagagtcttggattcaattatttaaaattag 837842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 177
Target Start/End: Original strand, 10475164 - 10475239
Alignment:
Q  102 ttgatggattgcctctatttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggag 177  Q
    ||||||||||| || | ||||| |||||||||  | || |||||||||||||| |||||||||||||| |||||||    
T  10475164 ttgatggattgtctttgtttttgttatgatttccaaaatacccattttgttatatggcaaatgaaggattttggag 10475239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 221
Target Start/End: Original strand, 6372439 - 6372521
Alignment:
Q  139 aaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttataccaat 221  Q
    ||||||||||| |||| |||||||||||||| | |||||||||||| |||| || | ||||   |||||||||||||| ||||    
T  6372439 aaacccattttattatatggcaaatgaaggattctggagttcaagagtcttagattcaattatataaaattagttataacaat 6372521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 192
Target Start/End: Original strand, 10464226 - 10464316
Alignment:
Q  102 ttgatggattgcctctatttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttgga 192  Q
    ||||||||||| || | ||||| |||||||||  | || |||||||||||||| |||||||||||||| ||||| | ||| || |||||||    
T  10464226 ttgatggattgtctttgtttttgttatgatttccaaaatacccattttgttatatggcaaatgaaggattttggggatcaggagtcttgga 10464316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 6392835 - 6392893
Alignment:
Q  156 tggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagtta 214  Q
    |||||||||||||| ||||||||||| || ||||||| | ||||  |||||||||||||    
T  6392835 tggcaaatgaaggattttggagttcacgagtcttggattcaattatttaaaattagtta 6392893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 181
Target Start/End: Original strand, 10468042 - 10468078
Alignment:
Q  145 attttgttatttggcaaatgaaggaatttggagttca 181  Q
    |||||||||| |||||||||||||| |||||||||||    
T  10468042 attttgttatatggcaaatgaaggattttggagttca 10468078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 181
Target Start/End: Original strand, 10482181 - 10482217
Alignment:
Q  145 attttgttatttggcaaatgaaggaatttggagttca 181  Q
    |||||||||| |||||||||||||| |||||||||||    
T  10482181 attttgttatatggcaaatgaaggattttggagttca 10482217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 119 - 227
Target Start/End: Original strand, 14514874 - 14514982
Alignment:
Q  119 tttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttatacc 218  Q
    ||||||||||||||| |||||||||||| ||||||| ||| ||||| | |||||||||||| |||| ||||||||| |||||||||||||||||||||      
T  14514874 tttttcttatgatttcaagaaaacccatcttgttatatggaaaatggatgaatttggagttgaagattcttggactcaattccttaaaattagttatatg 14514973  T
Q  219 aatcttcaa 227  Q
    |||||||||    
T  14514974 aatcttcaa 14514982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 18908885 - 18908811
Alignment:
Q  139 aaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagtt 213  Q
    |||||||||||||||| ||| | |||| |||||||||||||||||| ||||||||| ||||||| ||||||||||    
T  18908885 aaacccattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagtt 18908811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 18920841 - 18920767
Alignment:
Q  139 aaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagtt 213  Q
    |||||||||||||||| ||| | |||| |||||||||||||||||| ||||||||| ||||||| ||||||||||    
T  18920841 aaacccattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagtt 18920767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 140 - 213
Target Start/End: Complemental strand, 18913632 - 18913559
Alignment:
Q  140 aacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagtt 213  Q
    ||||||||||||||| ||| | |||| |||||||||||||||||| ||||||||| ||||||| ||||||||||    
T  18913632 aacccattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagtt 18913559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 119 - 215
Target Start/End: Original strand, 554450 - 554546
Alignment:
Q  119 tttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 215  Q
    ||||||| | |||||| ||  ||||||| || |||| ||||||||||  |||| ||||||| |||| ||||||||| |||| |||||||||||||||    
T  554450 tttttctcacgattttgagggaacccatcttattatatggcaaatgatagaatatggagttaaagagtcttggactcaattacttaaaattagttat 554546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 25698507 - 25698561
Alignment:
Q  145 attttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaatt 199  Q
    |||||||||| ||||||||||  |||||||||||| |||| ||||||||||||||    
T  25698507 attttgttatatggcaaatgagagaatttggagttgaagactcttggactaaatt 25698561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 192
Target Start/End: Original strand, 20975557 - 20975605
Alignment:
Q  144 cattttgttatttggcaaatgaaggaatttggagttcaagaatcttgga 192  Q
    ||||||||||| |||||||||| ||||||||||||| |||| |||||||    
T  20975557 cattttgttatatggcaaatgagggaatttggagttgaagattcttgga 20975605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 215
Target Start/End: Original strand, 25377072 - 25377144
Alignment:
Q  143 ccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 215  Q
    |||||||||||| |||   |||||||| |||||||||||||| ||||||| | ||||  ||||||||||||||    
T  25377072 ccattttgttatatggatgatgaaggattttggagttcaagagtcttggattcaattatttaaaattagttat 25377144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 20980604 - 20980665
Alignment:
Q  145 attttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaa 206  Q
    |||||||||| ||| ||||||  |||||| ||||| |||| ||||||||||| |||||||||    
T  20980604 attttgttatatggaaaatgacagaatttagagttgaagagtcttggactaagttccttaaa 20980665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 18965047 - 18964830
Alignment:
Q  1 ttgtgatgatctcacttgatttggggacagagacatgtacaaaattgttgctccctcaatgttgtgatgaagagctaca---tggttttcctactctttc 97  Q
    ||||||| |||||||||||| ||||||  ||||||| |||| | ||||| ||||||| ||||||||||||   || ||    || |  ||| || ||||     
T  18965047 ttgtgattatctcacttgatctggggatggagacatttacacagttgttactccctccatgttgtgatgagttgcaaccgcttgatactccgaccctttg 18964948  T
Q  98 tgtattgatggattgcctctatttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaa 197  Q
    |||||||||| ||||||| | |||| || ||||| || | ||||| |||||  |||| |||||||||||||||||||||||| |||| ||||||||| ||    
T  18964947 tgtattgatgaattgcctttgttttactcatgatcttgaaaaaactcatttcattatatggcaaatgaaggaatttggagttgaagactcttggactcaa 18964848  T
Q  198 ttccttaaaattagttat 215  Q
    || ||||||||| |||||    
T  18964847 tttcttaaaatttgttat 18964830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 102 - 213
Target Start/End: Original strand, 29647633 - 29647744
Alignment:
Q  102 ttgatggattgcctctatttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattcc 201  Q
    |||||||||||||| | ||||||| |  || |||||||||| ||||||||||| ||||||||||  ||||||||| || || ||||||||||| ||||||    
T  29647633 ttgatggattgcctttgtttttctcaccatcttaagaaaactcattttgttatatggcaaatgatagaatttggatttgaacaatcttggactcaattcc 29647732  T
Q  202 ttaaaattagtt 213  Q
    ||||||||||||    
T  29647733 ttaaaattagtt 29647744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 130 - 213
Target Start/End: Complemental strand, 29597637 - 29597554
Alignment:
Q  130 attttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagtt 213  Q
    |||| ||| |||| ||||||||||| ||||||||||  |||||||||||| || ||||||||||| ||||||||||||||||||    
T  29597637 atttcaaggaaactcattttgttatatggcaaatgattgaatttggagttgaacaatcttggactcaattccttaaaattagtt 29597554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 29642348 - 29642427
Alignment:
Q  134 taagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagtt 213  Q
    ||||||||| ||||| ||||| ||||||||||  ||||||||| || || ||||||||||| ||||||||||||||||||    
T  29642348 taagaaaactcatttcgttatatggcaaatgatagaatttggatttgaacaatcttggactcaattccttaaaattagtt 29642427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 214
Target Start/End: Complemental strand, 24330975 - 24330900
Alignment:
Q  139 aaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagtta 214  Q
    ||||| |||||||||| ||| | |||||||||||||| ||| |||| ||||||||| || |||||||| |||||||    
T  24330975 aaaccgattttgttatatgggagatgaaggaatttggggttgaagattcttggactcaactccttaaagttagtta 24330900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 147 - 194
Target Start/End: Original strand, 23086784 - 23086831
Alignment:
Q  147 tttgttatttggcaaatgaaggaatttggagttcaagaatcttggact 194  Q
    |||||||| ||||| |||||||| |||||||||||||| |||||||||    
T  23086784 tttgttatatggcagatgaaggagtttggagttcaagagtcttggact 23086831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 127 - 221
Target Start/End: Complemental strand, 50645573 - 50645479
Alignment:
Q  127 atgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttataccaat 221  Q
    |||||||| ||  ||| ||||||||||| |||||||||||||| |||||||||||||| ||||||| | ||||  ||||||||||||||| ||||    
T  50645573 atgattttgagggaactcattttgttatgtggcaaatgaaggattttggagttcaagagtcttggattcaattatttaaaattagttataacaat 50645479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 4570927 - 4570998
Alignment:
Q  145 attttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttata 216  Q
    |||||||||| |||||||||||| ||||||| ||| |||| ||||||||| |||| ||||||||||||||||    
T  4570927 attttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttata 4570998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 214
Target Start/End: Complemental strand, 21855459 - 21855384
Alignment:
Q  139 aaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagtta 214  Q
    ||||| |||||||||| ||| | |||||||||||||| ||| |||| ||||||||| || |||||||| |||||||    
T  21855459 aaaccgattttgttatatgggagatgaaggaatttggggttgaagattcttggactcaactccttaaagttagtta 21855384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 214
Target Start/End: Complemental strand, 4015032 - 4014966
Alignment:
Q  148 ttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagtta 214  Q
    ||||||| ||||| |||||| ||||||| ||| |||| ||||||||| ||||||||||| |||||||    
T  4015032 ttgttatatggcagatgaagaaatttggggttgaagattcttggactcaattccttaaagttagtta 4014966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 215
Target Start/End: Complemental strand, 39379131 - 39379061
Alignment:
Q  145 attttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 215  Q
    ||||| |||| ||||| |||||||||||||| ||| |||| ||||||||| |||| |||||||| ||||||    
T  39379131 attttattatatggcagatgaaggaatttggggttgaagagtcttggactcaatttcttaaaatcagttat 39379061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 10218985 - 10219054
Alignment:
Q  145 attttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagtta 214  Q
    |||||||| | |||||||||||| |||||||  || |||| ||||||||| |||| ||||||||||||||    
T  10218985 attttgttgtatggcaaatgaagaaatttgggattgaagattcttggactcaattacttaaaattagtta 10219054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 227
Target Start/End: Complemental strand, 17560843 - 17560761
Alignment:
Q  145 attttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttataccaatcttcaa 227  Q
    |||| ||||| ||||| |||||| ||||||| ||| |||| ||||||||   |||||||| ||||||||||| | ||||||||    
T  17560843 atttggttatatggcacatgaagaaatttggggttgaagattcttggacaccattccttataattagttataacgatcttcaa 17560761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 15961233 - 15961298
Alignment:
Q  150 gttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 215  Q
    ||||| ||| |||||||| ||||||||| | |||||||||||||| ||||| ||||| ||| ||||    
T  15961233 gttatatggaaaatgaagaaatttggagctgaagaatcttggactcaattctttaaagttaattat 15961298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0867 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 119 - 215
Target Start/End: Complemental strand, 4765 - 4669
Alignment:
Q  119 tttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 215  Q
    ||||||| ||||||| || ||||| |||||| |||| |||||||||||| |||||||||||||||| ||||||||| | ||  | ||||||||||||    
T  4765 tttttctcatgatttcaaaaaaactcattttattatatggcaaatgaagaaatttggagttcaagagtcttggactcagttattcaaaattagttat 4669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 42846513 - 42846459
Alignment:
Q  127 atgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttca 181  Q
    |||||||| || ||||||||||||||||||||||||||||||| |||||||||||    
T  42846513 atgattttgaggaaacccattttgttatttggcaaatgaaggattttggagttca 42846459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 27618473 - 27618574
Alignment:
Q  127 atgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttataccaatcttca 226  Q
    ||||||||||| |||| ||||||||||| ||| ||||| | ||| | |||||| |||| ||||||||| | || |||||| ||||||||   ||||||||    
T  27618473 atgattttaagcaaactcattttgttatatggaaaatggaagaactcggagttgaagagtcttggactcagttgcttaaagttagttatcagaatcttca 27618572  T
Q  227 ac 228  Q
    ||    
T  27618573 ac 27618574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 29390288 - 29390340
Alignment:
Q  147 tttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaatt 199  Q
    |||||||| ||||| |||| ||||||||||||| |||||||||| ||||||||    
T  29390288 tttgttatatggcagatgagggaatttggagttgaagaatcttgaactaaatt 29390340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 199
Target Start/End: Complemental strand, 11339505 - 11339435
Alignment:
Q  129 gattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaatt 199  Q
    ||||| ||| |||| || |||||||| ||||||||||  || |||||| ||||||||||||||||| ||||    
T  11339505 gatttcaaggaaactcaatttgttatatggcaaatgagcgagtttggatttcaagaatcttggactcaatt 11339435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 199
Target Start/End: Complemental strand, 11345187 - 11345117
Alignment:
Q  129 gattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaatt 199  Q
    ||||| ||| |||| || |||||||| ||||||||| | || |||||| ||||||||||||||||| ||||    
T  11345187 gatttcaaggaaactcaatttgttatatggcaaatggaagagtttggatttcaagaatcttggactcaatt 11345117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 191
Target Start/End: Complemental strand, 11338644 - 11338600
Alignment:
Q  147 tttgttatttggcaaatgaaggaatttggagttcaagaatcttgg 191  Q
    |||||||| ||||||||||| || |||||| ||||||||||||||    
T  11338644 tttgttatatggcaaatgaaagagtttggatttcaagaatcttgg 11338600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 3625740 - 3625804
Alignment:
Q  151 ttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 215  Q
    |||| |||||||||||| ||||||| ||| |||| ||||||||| |||| |||||||||||||||    
T  3625740 ttatatggcaaatgaagaaatttggggttgaagagtcttggactcaatttcttaaaattagttat 3625804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 25901351 - 25901279
Alignment:
Q  143 ccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 215  Q
    |||||||||||| ||| |||||||||| ||| |||||||||| ||||||| | ||||  | ||||||||||||    
T  25901351 ccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttat 25901279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 25915369 - 25915297
Alignment:
Q  143 ccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 215  Q
    |||||||||||| ||| |||||||||| ||| |||||||||| ||||||| | ||||  | ||||||||||||    
T  25915369 ccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttat 25915297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 3837904 - 3837958
Alignment:
Q  140 aacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggact 194  Q
    ||||||||||||| | ||| ||||||| || |||||||||||||| |||||||||    
T  3837904 aacccattttgttttgtgggaaatgaaagagtttggagttcaagagtcttggact 3837958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0354 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0354
Description:

Target: scaffold0354; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 7474 - 7529
Alignment:
Q  156 tggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattag 211  Q
    |||||||||||||||||||||||| | || ||||||  | ||||||||||||||||    
T  7474 tggcaaatgaaggaatttggagttgatgagtcttgggttcaattccttaaaattag 7529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 13385 - 13439
Alignment:
Q  140 aacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggact 194  Q
    ||||||||||||| | ||| ||||||| || |||||||||||||| |||||||||    
T  13385 aacccattttgttttgtgggaaatgaaagagtttggagttcaagagtcttggact 13439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University