View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7979_high_4 (Length: 260)
Name: NF7979_high_4
Description: NF7979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7979_high_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 6935408 - 6935646
Alignment:
| Q |
1 |
cccaaatcaagtgagatcatcacaaattgttcaactgtaagattcttcaaatgacaattatatgggtgacgaacacaccaactaatactacttttcaaat |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
6935408 |
cccaaatcaagtgagatcatcacgaattgttcgactgtaagattcttcaaatgacaattatatcggtaacgaacacaccaactaatactacttttcaaat |
6935507 |
T |
|
| Q |
101 |
aaacaccatttttcacattctgacacaccaatgccacttgcaaacaatcaatgtctctccaatcattatcacccaaagtaaaaactcttatcacggtttt |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6935508 |
aaacaccatttttcacattctggcacaccaatgccacttgcaaacaatcaatgtctctccaatcattatcacccaaagtaaaaactcttatcacggtttt |
6935607 |
T |
|
| Q |
201 |
cataaggtcgtcgtccctttccaaactgaagaacaccaa |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6935608 |
cataaggtcgtcgtccctttccaaactgaagaacaccaa |
6935646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 6943144 - 6943382
Alignment:
| Q |
1 |
cccaaatcaagtgagatcatcacaaattgttcaactgtaagattcttcaaatgacaattatatgggtgacgaacacaccaactaatactacttttcaaat |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
6943144 |
cccaaatcaagtgagatcatcacgaattgttcaactgtaagattcttcaaatgacaattatatcggtgacgaacacaccaactaatactacttttcaaat |
6943243 |
T |
|
| Q |
101 |
aaacaccatttttcacattctgacacaccaatgccacttgcaaacaatcaatgtctctccaatcattatcacccaaagtaaaaactcttatcacggtttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6943244 |
aaacaccatttttcacattctgacacaccaatgccacatgcaaacaatcaatgtctctccaatcattatcacccaaagtaaaaactcttaccacggtttt |
6943343 |
T |
|
| Q |
201 |
cataaggtcgtcgtccctttccaaactgaagaacaccaa |
239 |
Q |
| |
|
||||||||||||| |||||||| ||||||| |||||||| |
|
|
| T |
6943344 |
cataaggtcgtcgaccctttccgaactgaacaacaccaa |
6943382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 6921540 - 6921741
Alignment:
| Q |
1 |
cccaaatcaagtgagatcatcacaaattgttcaactgtaagattcttcaaatgacaattatatgggtgacgaacacaccaactaatactacttttcaaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||| | ||||||||||||||||| |||||||||||||| |
|
|
| T |
6921540 |
cccaaatcaagtgagatcatcacaaattgttcaacaataagatttttcaaatgacaataatatctgcaacgaacacaccaactaacactacttttcaaat |
6921639 |
T |
|
| Q |
101 |
aaacaccatttttcacattc------------tgacacaccaatgccacttgcaaacaatcaatgtctctccaatcattatcacccaaagtaaaaactct |
188 |
Q |
| |
|
|||| |||||| ||||| | |||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6921640 |
aaacgccatttcgcacatacttaccaaaaggatgacgcaccaataccacaggcaaacaatcaatgtctctccaatcattatcacccaaagtaaaaactct |
6921739 |
T |
|
| Q |
189 |
ta |
190 |
Q |
| |
|
|| |
|
|
| T |
6921740 |
ta |
6921741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 6948070 - 6948265
Alignment:
| Q |
1 |
cccaaatcaagtgagatcatcacaaattgttcaactgtaagattcttcaaatgacaattatatgggtgacgaacacaccaactaatactacttttcaaat |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6948070 |
cccaaatcaagtgagatcatcacaagttgttcaaccataagattcttcaaatgacaataatatcggtgacgaacacaccaactaatactactattcaaat |
6948169 |
T |
|
| Q |
101 |
aaacaccatttttcacattc------------tgacacaccaatgccacttgcaaacaatcaatgtctctccaatcattatcacccaaagtaaaaa |
184 |
Q |
| |
|
||||||| | | |||||| | |||| ||||| | |||| ||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6948170 |
aaacaccgtctctcacatacttaccaaaaggatgactcaccactaccacaggcaaacaatcaatttctctccaatcattatcacccaaagtaaaaa |
6948265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 6 - 104
Target Start/End: Original strand, 6954714 - 6954812
Alignment:
| Q |
6 |
atcaagtgagatcatcacaaattgttcaactgtaagattcttcaaatgacaattatatgggtgacgaacacaccaactaatactacttttcaaataaac |
104 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| ||||||| ||| |||| |||||||| | ||||||||||| |
|
|
| T |
6954714 |
atcaagtgagatgatcacaaatttttcaactgtaagattcttcaaatgacaataatatcggtgacggacaacccaattaatactattattcaaataaac |
6954812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 186
Target Start/End: Original strand, 6954841 - 6954906
Alignment:
| Q |
121 |
tgacacaccaatgccacttgcaaacaatcaatgtctctccaatcattatcacccaaagtaaaaact |
186 |
Q |
| |
|
||| |||||||| |||| | ||||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
6954841 |
tgatacaccaattccaccgggaaacaatcaatatctctccaaacattatcacccaaagtaaaaact |
6954906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 1986145 - 1986349
Alignment:
| Q |
1 |
cccaaatcaagtgagatcatcacaaattgttcaactgtaagattcttcaaatgacaattatatgggtgacgaacacaccaactaatactacttttcaaat |
100 |
Q |
| |
|
||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1986145 |
cccaaatcaagtgagataattacaagttgttcaactgtaagattcttcaaatgacaattatatcggtgacgaacacaccaactaatactactattcaaat |
1986244 |
T |
|
| Q |
101 |
aaacaccatttttcacattc---------------tgacacaccaatgccacttgcaaacaatcaatgtctctccaatcattatcacccaaagtaaaaac |
185 |
Q |
| |
|
||||||||||| |||||| | |||||||||| | |||| ||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
1986245 |
aaacaccatttctcacatacttaccaccaaaaggatgacacaccactaccacaggcaaacaatcaatttctctccaatcattataacccaaagtaaaaac |
1986344 |
T |
|
| Q |
186 |
tctta |
190 |
Q |
| |
|
||||| |
|
|
| T |
1986345 |
tctta |
1986349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 15572100 - 15572208
Alignment:
| Q |
1 |
cccaaatcaagtgagatcatcacaaattgttcaactgtaagattcttcaaatgacaattatatgggtgacgaacacaccaactaatactacttttcaaat |
100 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||| |||| | ||||| || ||||| || ||||| | ||||||| |
|
|
| T |
15572100 |
cccaaatcaagcgagattatcacaaattgttcaatcgtaagattcttcaaatgacaataatatcgttgacgggcaaaccaattagtactattgttcaaat |
15572199 |
T |
|
| Q |
101 |
aaacaccat |
109 |
Q |
| |
|
|||| |||| |
|
|
| T |
15572200 |
aaactccat |
15572208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 15572253 - 15572307
Alignment:
| Q |
142 |
aaacaatcaatgtctctccaatcattatcacccaaagtaaaaactcttatcacgg |
196 |
Q |
| |
|
||||||||||| ||||||||| | ||||||||||||||||| ||||||| ||||| |
|
|
| T |
15572253 |
aaacaatcaatatctctccaaacgttatcacccaaagtaaatactcttaccacgg |
15572307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 13417125 - 13417213
Alignment:
| Q |
13 |
gagatcatcacaaattgttcaactgtaagattcttcaaatgacaattatatgggtgacgaacacaccaactaatactacttttcaaataaacacc |
107 |
Q |
| |
|
||||| |||||||||||||||| ||||| ||||||||||||||||| ||||||| || ||||| |||||||| | || ||||||||||| |
|
|
| T |
13417125 |
gagataatcacaaattgttcaattgtaa------tcaaatgacaattatatcggtgacgggcaaaccaattaatactattattgaaataaacacc |
13417213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University