View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7979_low_1 (Length: 663)

Name: NF7979_low_1
Description: NF7979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7979_low_1
NF7979_low_1
[»] chr8 (3 HSPs)
chr8 (72-645)||(5461013-5461581)
chr8 (16-74)||(5461604-5461662)
chr8 (233-281)||(17882641-17882689)
[»] chr2 (2 HSPs)
chr2 (232-290)||(24866816-24866874)
chr2 (334-385)||(24866706-24866757)
[»] chr1 (3 HSPs)
chr1 (232-292)||(2248768-2248828)
chr1 (238-293)||(14138482-14138536)
chr1 (340-384)||(2248663-2248707)
[»] chr5 (1 HSPs)
chr5 (232-292)||(40801232-40801292)
[»] chr6 (1 HSPs)
chr6 (232-292)||(18701685-18701745)


Alignment Details
Target: chr8 (Bit Score: 418; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 72 - 645
Target Start/End: Complemental strand, 5461581 - 5461013
Alignment:
Q  72 taaaggtcaaaaggaaaataaacaagttcaaccaccgcgcacaccgaaaacagacagccgagagttcaaggaactcatgaagctggacctagtagaatta 171  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5461581 taaaggtcaaaaggataataaacaagttcaaccaccgcgcacaccgaaaacagacagccgagagttcaaggaactcatgaagctggacctagtagaatta 5461482  T
Q  172 gacatgttacacttggttagcaatgtcagccattactgattattcacataacatcattaattgtacatttattactttctattttaccttacaactgttc 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5461481 gacatgttacacttggttagcaatgtcagccattactgattattcacataacatcattaattgtacatttattactttctattttaccttacaactgttc 5461382  T
Q  272 cattattttaggttggagaaaagtagagaaagaggggctgccatcgtccatgagaccatgacagacatagaggtttcctcattatttacaatgtatgtta 371  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||        |||||||||||||||||||||||||  ||||||||||||||||    
T  5461381 cattattttaggttggagaaaagtagagaaagaggggctgctatcgtcc--------atgacagacatagaggtttcctcatcgtttacaatgtatgtta 5461290  T
Q  372 caagaattgaattgcacaaagnnnnnnnnnnnnnnnnnnnnnaat---cttatttcgttctaacttatatttgaaaaacacaataactttatgagagggg 468  Q
    |||||||||||||||||||||                     |||   |||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5461289 caagaattgaattgcacaaagttttttttttcatttttttttaatcttcttatttcgttctaacttatatttgaaaaacacaataactttatgagaggga 5461190  T
Q  469 ttatggtttcttgaggaatgtcccgaaacaaagagatcnnnnnnntaggaagaaatttggatgatcgacggagctttgcaacaacgtttttgtaatggaa 568  Q
    ||||||||||||||||||||||||||||||||||||||       ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5461189 ttatggtttcttgaggaatgtcccgaaacaaagagatcaaaaaaataggaagaaatttggattatcgacggagctttgcaacaacgtttttgtaatggaa 5461090  T
Q  569 aaactgagattgggatatgtggtacatgcaacagtactgtaaaagcagcacatagtcggtgttggaatgatcatctt 645  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5461089 aaactgagattgggatatatggtacatgcaacagtactataaaagcagcacatagtcggtgttggaatgatcatctt 5461013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 5461662 - 5461604
Alignment:
Q  16 tgaaaggaaaagtaaacaaagaatgagcgttgtgcaaagagaacatcaactatccataa 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5461662 tgaaaggaaaagtaaacaaagaatgagcgttgtgcaaagagaacatcaactatccataa 5461604  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 233 - 281
Target Start/End: Original strand, 17882641 - 17882689
Alignment:
Q  233 tgtacatttattactttctattttaccttacaactgttccattatttta 281  Q
    |||||||||| | |||| |||||||||||||||||||| ||||||||||    
T  17882641 tgtacatttacttctttttattttaccttacaactgttacattatttta 17882689  T

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Target: chr2 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 232 - 290
Target Start/End: Complemental strand, 24866874 - 24866816
Alignment:
Q  232 ttgtacatttattactttctattttaccttacaactgttccattattttaggttggaga 290  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  24866874 ttgtacatttactactttctattttaccttacaactgttacattattttaggttggaga 24866816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 334 - 385
Target Start/End: Complemental strand, 24866757 - 24866706
Alignment:
Q  334 agacatagaggtttcctcattatttacaatgtatgttacaagaattgaattg 385  Q
    ||||||||||||||||||||| ||| | ||||||  ||||||||||||||||    
T  24866757 agacatagaggtttcctcattgttttcgatgtatactacaagaattgaattg 24866706  T

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Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 232 - 292
Target Start/End: Complemental strand, 2248828 - 2248768
Alignment:
Q  232 ttgtacatttattactttctattttaccttacaactgttccattattttaggttggagaaa 292  Q
    ||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  2248828 ttgtacatttactactttcgattttaccttacaactgttacattattttaggttggagaaa 2248768  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 238 - 293
Target Start/End: Original strand, 14138482 - 14138536
Alignment:
Q  238 atttattactttctattttaccttacaactgttccattattttaggttggagaaaa 293  Q
    ||||| |||||||||| |||||||||||||||| || |||||||||||||||||||    
T  14138482 atttactactttctatgttaccttacaactgttaca-tattttaggttggagaaaa 14138536  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 340 - 384
Target Start/End: Complemental strand, 2248707 - 2248663
Alignment:
Q  340 agaggtttcctcattatttacaatgtatgttacaagaattgaatt 384  Q
    |||| |||||||||| ||| ||||||||| |||||||||||||||    
T  2248707 agagatttcctcattgttttcaatgtatgatacaagaattgaatt 2248663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 232 - 292
Target Start/End: Original strand, 40801232 - 40801292
Alignment:
Q  232 ttgtacatttattactttctattttaccttacaactgttccattattttaggttggagaaa 292  Q
    |||||||| || | ||||| ||||||| ||||||||||| ||||| |||||||||||||||    
T  40801232 ttgtacatctactcctttcaattttacattacaactgttacattaatttaggttggagaaa 40801292  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 232 - 292
Target Start/End: Complemental strand, 18701745 - 18701685
Alignment:
Q  232 ttgtacatttattactttctattttaccttacaactgttccattattttaggttggagaaa 292  Q
    |||||||| || | ||||| ||||||| ||||||||||| ||||| |||| ||||||||||    
T  18701745 ttgtacatctactcctttcaattttacattacaactgttacattaatttacgttggagaaa 18701685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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