View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7979_low_2 (Length: 519)
Name: NF7979_low_2
Description: NF7979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7979_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 200 - 507
Target Start/End: Complemental strand, 3321984 - 3321680
Alignment:
| Q |
200 |
tgcatgtagtttctgaacacaatttagttattttcaaaatatctcctaattagatcctcaaatacttgnnnnnnncaccataaccttcaagccatgtttc |
299 |
Q |
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| T |
3321984 |
tgcatgtagtttcagaacacaatttagttattttcaaaatatctcct---tagatcctcaaatacttatttttttcaccataaccttcaagccatgtttc |
3321888 |
T |
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| Q |
300 |
atgtgtaggattaaagaaatacttggctttactacttgaccttcaaccacatgaatgtgataattcaacagtattgctacaataatcattttcatctcaa |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3321887 |
atgtgtaggattaaagaaatacttggctttactacttgaccttcaaccacatgaatatgataattcaacagtattgctacaataatcattttcatctcaa |
3321788 |
T |
|
| Q |
400 |
tgaaactcatctccttacccaaacaactccttggtccagcattgaaagcaataaacttgtaagaaggtacatgaattatttctcctttcttagaaatcca |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3321787 |
tgaaactcatctccttacccaaacaactccttggtccagcattgaaagcaataaacttgtaagaaggtacatgaattatttctcctttcttagaaatcca |
3321688 |
T |
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| Q |
500 |
cctctctg |
507 |
Q |
| |
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|||||||| |
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| T |
3321687 |
cctctctg |
3321680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 3322166 - 3322048
Alignment:
| Q |
17 |
ataaaggtttaaagtttttgtgacaacaaatcagctattaatgattttcaaaaacttgttcaacattatgagacaaatataacaataacatagataatat |
116 |
Q |
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||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3322166 |
ataaaggcttaaagtttttgtgacaacaaatcaactattaataattttcaaaaacttgttcaacattatgagacaaatataacaataacatagataatat |
3322067 |
T |
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| Q |
117 |
atttatactcttttattgg |
135 |
Q |
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||||||||||||||||||| |
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| T |
3322066 |
atttatactcttttattgg |
3322048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 280 - 507
Target Start/End: Original strand, 12175630 - 12175857
Alignment:
| Q |
280 |
taaccttcaagccatgtttcatgtgtaggattaaagaaatacttggctttactacttgaccttcaaccacatgaatgtgataattcaacagtattgctac |
379 |
Q |
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||||||||||||||||||||||||||| | | ||||| |||||| ||| ||| |||| ||||| ||||||||||||||||||| |||||||| |
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| T |
12175630 |
taaccttcaagccatgtttcatgtgtaaaacaacagaaagacttgggattatgggatgatcttccaccacttgaatgtgataattcaacaatattgctat |
12175729 |
T |
|
| Q |
380 |
aataatcattttcatctcaatgaaactcatctccttacccaaacaactccttggtccagcattgaaagcaataaacttgtaagaaggtacatgaattatt |
479 |
Q |
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| T |
12175730 |
agcaaccattttcatctcaatgaagcttatatccttacccaaacaactccttggtccagcattgaaagcaatgaacttgtaagagggaacatgaattatc |
12175829 |
T |
|
| Q |
480 |
tctcctttcttagaaatccacctctctg |
507 |
Q |
| |
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| T |
12175830 |
cctcctttcttagaaatccacctctctg |
12175857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 280 - 507
Target Start/End: Original strand, 12164105 - 12164332
Alignment:
| Q |
280 |
taaccttcaagccatgtttcatgtgtaggattaaagaaatacttggctttactacttgaccttcaaccacatgaatgtgataattcaacagtattgctac |
379 |
Q |
| |
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||||||||||||||||||||||||||| || | ||||| |||||| ||| ||| |||| ||||| ||||||||||||||||||| |||||||| |
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| T |
12164105 |
taaccttcaagccatgtttcatgtgtaagacaacagaaagacttgggattatgggatgatcttccaccacttgaatgtgataattcaacaatattgctat |
12164204 |
T |
|
| Q |
380 |
aataatcattttcatctcaatgaaactcatctccttacccaaacaactccttggtccagcattgaaagcaataaacttgtaagaaggtacatgaattatt |
479 |
Q |
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| || |||||||||||||||||| || || |||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||| || ||| |
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| T |
12164205 |
agcaaccattttcatctcaatgaagcttatatccttacccaaacaactccttggtccagcattaaaagcaatgaacttgtaagaaggaacataaactatc |
12164304 |
T |
|
| Q |
480 |
tctcctttcttagaaatccacctctctg |
507 |
Q |
| |
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||||||| | ||||||||||||||||| |
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| T |
12164305 |
cctcctttttgagaaatccacctctctg |
12164332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 5e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 339 - 507
Target Start/End: Original strand, 36668016 - 36668184
Alignment:
| Q |
339 |
ccttcaaccacatgaatgtgataattcaacagtattgctacaataatcattttcatctcaatgaaactcatctccttacccaaacaactccttggtccag |
438 |
Q |
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||||| ||||| ||||||||||| ||||||| |||||||| | || ||| |||| ||||||||| || || ||||||||||||| |||||||||||||| |
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| T |
36668016 |
ccttccaccacttgaatgtgatagttcaacaatattgctatagcaaccatcttcaactcaatgaagcttatatccttacccaaacgactccttggtccag |
36668115 |
T |
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| Q |
439 |
cattgaaagcaataaacttgtaagaaggtacatgaattatttctcctttcttagaaatccacctctctg |
507 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||| | ||||||||||||||| ||||||||||| |
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| T |
36668116 |
cattgaaagcaatgaacttgtaagaaggtacatgaattgtccctcctttcttagaaacccacctctctg |
36668184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 472
Target Start/End: Complemental strand, 13065439 - 13065381
Alignment:
| Q |
414 |
ttacccaaacaactccttggtccagcattgaaagcaataaacttgtaagaaggtacatg |
472 |
Q |
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|||||||||||||| ||||| || ||||||||||| || ||||||||||| |||||||| |
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| T |
13065439 |
ttacccaaacaacttcttggccctgcattgaaagctatgaacttgtaagacggtacatg |
13065381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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